Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1760 ATGGCTGTTATAACCACAACAAGGAGGAGTGAACGTTTCCGGCGAACAACACCACCGACATGTAAGTATTGGCTAGCTGGGAGATGCAACCGAAATCCTTGTAGATTTTCGCATAGCTCACCAACATTGCCATCGAATGCATACTATAATGGCAATACCACATATAAGCATTCAAAGCAACCAACAAATTGCGCATCGAAGACCCTCGAGAAGCCAGCAAATCGTGCACCAATGGCTGTTGTGTCTGTTGAGAAGCCAACCAAGTGTGAACCAATGGCTATGTCTGATGAGAAGATTACAGTGTGTGGACTAGAGGCTGTGTCCGTTGAGGAGCCAACCAAGTGTGTACAAAAGGCTGTATTAATTGAAAAGACTGCAGATGTGGAAGATGTGGACACCGTTATTGCTGAGGCTCCTGTGGAGAAATCACGAAGTATTTGTAAATATTGGATGACTGACACTTGTGTGCATGGTGACCTGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAGGCTTCATGAACACAAGAAGGCTGTAACCGGGATTGCATTGCCGGCTGGTTCGGACAAACTTTATTCTGGCAGCACTGATGGCACAGTTCGGGCGTGGGACTGCAACACTGGCCGCTGTCTTGGTGTGATAAACCTTAATTCTGAAGTAACCTCGTTGGTATCTGAGGGCTCATGGATATTTGCCGGTGTGAAGAATGCTGTGAAGGCATGGAATATTCAAACCGGTGCAGATTTTACTCTTGATGGACCTATGGGGCAAGTCCTGTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGAGTCAGCTCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTGAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAATGGACATTCTGACGTAGTCACATCACTTATTTGTTGGGACCATTACTTGTTATCGAGTTCTTCTGATTGCACGGTCAATGTTTGGGTGTGCACTGAGGAGGGAATTCTGAAGGTGGCATACACTCACACTGAAAAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCGAAACCAATATTGTTCTGCTCGTGCAAAGGCAATTCAGTTCGTATGTATGAATTGCCGACGTTTTTAGAGAGAGGTCGATTGTTTACAAGACAAGAAATTCGATCCTTTGAGATAGGCCCTAACGGACTCTTCTTTACTGGAGATGGGACTGGTTTGTTGAATGTGTGGAAATGGTTGGAAGAGCCTAAGGTGCCATGCTCCTGA 1422 0.4529 MAVITTTRRSERFRRTTPPTCKYWLAGRCNRNPCRFSHSSPTLPSNAYYNGNTTYKHSKQPTNCASKTLEKPANRAPMAVVSVEKPTKCEPMAMSDEKITVCGLEAVSVEEPTKCVQKAVLIEKTADVEDVDTVIAEAPVEKSRSICKYWMTDTCVHGDLCQNLHSWFYGDGFSTLARLHEHKKAVTGIALPAGSDKLYSGSTDGTVRAWDCNTGRCLGVINLNSEVTSLVSEGSWIFAGVKNAVKAWNIQTGADFTLDGPMGQVLSLNVGNDILLAGAEDGVIYAWRVSSDPKAESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLDTLQCTMTLNGHSDVVTSLICWDHYLLSSSSDCTVNVWVCTEEGILKVAYTHTEKNAVLGLYGMTDAEAKPILFCSCKGNSVRMYELPTFLERGRLFTRQEIRSFEIGPNGLFFTGDGTGLLNVWKWLEEPKVPCS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1760 473 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Ahy2g1760 473 SUPERFAMILY WD40 repeat-like 174 466 IPR036322 GO:0005515
Ahy2g1760 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 13 470 - -
Ahy2g1760 473 SMART WD40_4 426 463 IPR001680 GO:0005515
Ahy2g1760 473 SMART WD40_4 339 376 IPR001680 GO:0005515
Ahy2g1760 473 SMART WD40_4 251 288 IPR001680 GO:0005515
Ahy2g1760 473 SMART WD40_4 298 336 IPR001680 GO:0005515
Ahy2g1760 473 SMART WD40_4 172 211 IPR001680 GO:0005515
Ahy2g1760 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 211 - -
Ahy2g1760 473 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Ahy2g1760 473 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Ahy2g1760 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 339 - -
Ahy2g1760 473 Gene3D - 158 296 IPR015943 GO:0005515
Ahy2g1760 473 Gene3D - 297 471 IPR015943 GO:0005515
Ahy2g1760 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Ahy2g1760 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 375 IPR001680 GO:0005515
Ahy2g1760 473 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Ahy2g1760 473 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Ahy2g1760 473 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Ahy2g1760 473 Pfam WD domain, G-beta repeat 300 336 IPR001680 GO:0005515
Ahy2g1760 473 Pfam WD domain, G-beta repeat 341 375 IPR001680 GO:0005515
Ahy2g1760 473 Pfam WD domain, G-beta repeat 176 211 IPR001680 GO:0005515
Ahy2g1760 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 345 IPR001680 GO:0005515
Ahy2g1760 473 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Ahy2g1760 473 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Ahy2g1760 473 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Ahy2g1760 473 PANTHER - 13 470 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1760 Ahy-Chr2 89735803 89738931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1760 182 395 Eukaryotic Initiation Factors Gene Family AT2G46290 23.276 1.64e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy2g1760 WD40 1.60E-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1760 - - ahf:112726849 769.615