LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g1755	ATGGGGTCTAGGAGCCATGAAGAATCGCCATGGCTATTGGAAAATGGGAATCCAAAGGTGTTGACCAAGGATATGAGACATGGAAGAACAGCACACAACATGTCATCATCTTCTTTGAGGAAAAAATCTGAACTCACTGTTATTTCAAAGGTTCCCTATGGATTCCTCAGAAACTTTCTTGCTAACTTGCAAGAGGTTTTTCTTGGAACCAAGCTTTTCATTCTCTTCCCATCAATTCCTCTTGCTATCATTGCCCATTGTTTTGGTTTTGCAAGACCATGGGTTTTTGCCTTGAGCTTACTTGGTTTAACCGTACTTGCTGAAAGAGTCAGCTTCATGACTGAGCAAGTGGCTTGTTACACTGGTCCCACAGTTGGAGGACTTCTGAATGCTACATGTGGGAATGCAACAGAGCTTATCATAGCAATTTTTGCACTTAGTAACAACAAAATTGCTGTGGTCAAGTATTCTCTTCTTGGTTCTGTACTTTCAAACCTTCTTTTGGTTCTTGGCACTTCCCTACTTTGTGGTGGCATTGCAAATCTTAGGCAGGAGCAAAAATATGACAGAAGGCAAGCTGATGTGAACTCTCTTATGCTGCTTCTGGCATTGTTGTGCCACATGCTCCCACTGCTGTTCAGATATGGCAGCGGCTCACCGGCTGTGGTGGCCCAGGCATCCTTGAATGTGTCTAGAGCTGCTAGCCTTGTGATGTTGTGTGCTTACTGTGCTTACATTGCCTTCCAACTTTGGACTCACCGGCAACTATTCGAAGCACAAGTAGATAATGATGATGAAGGTCAAAATGATTCAGAAGAAGCAGTGATAGGTTTCTGGAGTGGGATTGGTTGGCTTGTTGGAATGACTGCAATTATTGCTCTGTTGTCTGAATATGTGGTGCAGACTATAGAGGATGCATCAAATTCATGGGGTTTGTCTGTGAGTTTCATCAGCATAATCTTGCTGGCAATCGTTGGCAATGCCGCCGAACATGCTGGAGCTGTCATATTTGCTTTCAAGAACAAACTGGACATCACATTAGGTGTTGCTTTGGGGTCTGCAACTCAGATTAGCATGTTTGTGGTTCCAGTGTGTGTGATTGTTGGTTGGATTCTTGGCATAAAAATGGACCTCAACTTCAACCTCTTGGAGACAGGTTCTCTTGCTTTGGCAATAATTGTCACAGCCTTTACATTACAGGATGGAACTTCTCACTACATGAAAGGCCTTGTTCTCCTTCTATGCTACATTGTTATTGGGGCCTGCTTTTTCGTTCAGACAACACCCTCTGATCAACTTAATGATGAAGTTAATAATGTGATGCTTAAACCAGCAACCGATGCAGTTTTTAGAGCTTAA	1359	0.4305	MGSRSHEESPWLLENGNPKVLTKDMRHGRTAHNMSSSSLRKKSELTVISKVPYGFLRNFLANLQEVFLGTKLFILFPSIPLAIIAHCFGFARPWVFALSLLGLTVLAERVSFMTEQVACYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSVLSNLLLVLGTSLLCGGIANLRQEQKYDRRQADVNSLMLLLALLCHMLPLLFRYGSGSPAVVAQASLNVSRAASLVMLCAYCAYIAFQLWTHRQLFEAQVDNDDEGQNDSEEAVIGFWSGIGWLVGMTAIIALLSEYVVQTIEDASNSWGLSVSFISIILLAIVGNAAEHAGAVIFAFKNKLDITLGVALGSATQISMFVVPVCVIVGWILGIKMDLNFNLLETGSLALAIIVTAFTLQDGTSHYMKGLVLLLCYIVIGACFFVQTTPSDQLNDEVNNVMLKPATDAVFRA*	453

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy2g1755	452	PANTHER	VACUOLAR CATION/PROTON EXCHANGER 3	5	437	-	-
Ahy2g1755	452	PANTHER	VACUOLAR CALCIUM ION TRANSPORTER	5	437	IPR004713	GO:0006812\|GO:0008324\|GO:0016021
Ahy2g1755	452	Gene3D	-	123	424	IPR044880	-
Ahy2g1755	452	TIGRFAM	cax: calcium/proton exchanger	78	424	IPR004798	GO:0006816\|GO:0015369
Ahy2g1755	452	Pfam	Sodium/calcium exchanger protein	94	251	IPR004837	GO:0016021\|GO:0055085
Ahy2g1755	452	Pfam	Sodium/calcium exchanger protein	282	419	IPR004837	GO:0016021\|GO:0055085
Ahy2g1755	452	TIGRFAM	caca2: calcium/proton exchanger	58	424	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g1755	Ahy-Chr2	89601083	89605994	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g1755	10	433	Antiporters	AT2G38170	70.737	0.0	590

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g1755	K07300		-	gmx:100782052	660.988

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy12g2028	12	103935971	103941376	Ahy2g1755	2	89601083	89605994	hybridization
Ahy14g1866	14	106126693	106131756	Ahy2g1755	2	89601083	89605994	PCT
Ahy4g1655	4	98142202	98147204	Ahy2g1755	2	89601083	89605994	PCT
Ahy2g1755	2	89601083	89605994	Ahy14g1866	14	106126693	106131756	PCT
Ahy2g1755	2	89601083	89605994	Ahy4g1655	4	98142202	98147204	PCT

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