Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1718 ATGCCTCGCCGTAGTCCTCCGTCCTCATCATCGCCGCCGAGGCCAACACCTATTCCGGCCAAATTCTGGCGTGCATGTGCTGGAATCTCTGCGCACGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCTTAACCTTTCACCTCTAGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTTTTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTCCTTCCTGTCACCGATGGATCCGCTCAGGATTTTCTTTCACCTGCCGTCGCCGCCGAAGGCAGCGGCAACGGCAATGGCGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAACAATGGCGGAGGGTTTTCGGTGCCGAGATTCTGTGCGGACTTGATCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTTCGCCACATCTACCGAGGGACGCCGAGACGGCACCTCTTCACTTCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCTGGCGATACTGTGGTCTTCATGAAGGACTCCGATGGCAGGATGTTTGTCGGAATCCGTCGCAATATGTCACCGGACGACGGTATCTCAGACGGCGGATTGGATTGGTTATCAAAGATCGTTGGGATGGACGAGGGGGAAAAGGAAAAAGAAGAGGAAGATGAAGAGGTGATGATGGAAGGGTTTGCAAGAAACGGGAAGGGGAGGGTGAGTTCGGCTTCAGTGGCGGAGGCGATGGAGCTGGCGGCCCAGAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTAAAGGCAGAGGATGTAGACGTGAAGATGAATGGTATTCTCTGCAGTGTTGGGATGAGAGTGAAGATGGCTAGAGAGAACTACGATTCTTCACGGATGACTTGGTTTCAGGGAACAGTTTCTGGTGTTACTATTCCCGGTGAAGCTCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCTGAAATCTTGAAGAATGTAAGTCCCGTTAGTCCATGGCAGGTGGAGTTTCTTTCTGGCACACCTTCACTTCCTCAAGTATTTCCCCCAACAAAAAAGTTCAGAACTGCAGACGGTTCTAAAATTTTCAGTCATGAAGTGGAAGAATCCTCCTTTTCCATGACAAGACTTGCTATTCCTGATTTAGCAATGGGAGTGCTGAATCAAACATTGTTGATGAGTAGTTATGGCACCCCTTTTCCTGCTAGCATTCAGGGAGCCAGGCATCCTCTACTTTCTGCACCTACTTGTCCCATTTTTCCGATTAATCCTCCTCTGTCTATTGCTAACTCCTTTGAGAATAACATTAGACCAAGGTTAAATGCTATGTTGCCAGAGCCTAATATTGACACTCATAAACCTGAAAGCTTATCTCCACATAACAAGTCTAGTTTGACCCCTAACAGCAACTCAACCAAATCTGGGACTGCTTCTTTTCAGCTATTTGGTTGTACTATTCAAACAGATCAAGCTTCTGATGAAATTGATGACCATAGCACCGCTAAAAATGACGCAGGAGAAGACAACGAGTCCTACACATATAGACTAAAGGCCGCGACTCAACAGTCTCAGCAAAGTGGAGAGGACCTTACCAATGGCTCTATAGCTTCAATTGTTGATTCCGATGCGGATTGGCGTGAGACCGCCTCAGCGCCGTACAAGAACTACATATACAGGATGGGGTTGTTCTTCGCTAGCAGCCTCCGTACCTCCATGTTGAGGCCGTCGTTAGGCTCCACCACCAGTCGAGCCCAAGGAAAGCGTGGATTTGATGCTGCAGGTACAGGAGCTCCAACGCAGCCTTCAGCAGCAGGCTCAGGAATTTAA 1986 0.5025 MPRRSPPSSSSPPRPTPIPAKFWRACAGISAHAPVVNSRVYYFPQGHIDQAASQPLNLSPLVYSRPVIPCRVAAVNFFADPNTDEVFLKILLLPVTDGSAQDFLSPAVAAEGSGNGNGDDEKVESYAKILTRSDANNGGGFSVPRFCADLIFPPLNFEEDPPVQTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGIRRNMSPDDGISDGGLDWLSKIVGMDEGEKEKEEEDEEVMMEGFARNGKGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNGILCSVGMRVKMARENYDSSRMTWFQGTVSGVTIPGEAQPWSGSPWRMLQITWDESEILKNVSPVSPWQVEFLSGTPSLPQVFPPTKKFRTADGSKIFSHEVEESSFSMTRLAIPDLAMGVLNQTLLMSSYGTPFPASIQGARHPLLSAPTCPIFPINPPLSIANSFENNIRPRLNAMLPEPNIDTHKPESLSPHNKSSLTPNSNSTKSGTASFQLFGCTIQTDQASDEIDDHSTAKNDAGEDNESYTYRLKAATQQSQQSGEDLTNGSIASIVDSDADWRETASAPYKNYIYRMGLFFASSLRTSMLRPSLGSTTSRAQGKRGFDAAGTGAPTQPSAAGSGI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1718 661 Gene3D - 123 228 IPR015300 -
Ahy2g1718 661 CDD B3_DNA 125 226 IPR003340 GO:0003677
Ahy2g1718 661 Pfam Auxin response factor 283 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy2g1718 661 Gene3D - 322 395 - -
Ahy2g1718 661 MobiDBLite consensus disorder prediction 496 526 - -
Ahy2g1718 661 PANTHER AUXIN RESPONSE FACTOR 13 567 - -
Ahy2g1718 661 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Ahy2g1718 661 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Ahy2g1718 661 MobiDBLite consensus disorder prediction 628 661 - -
Ahy2g1718 661 MobiDBLite consensus disorder prediction 511 526 - -
Ahy2g1718 661 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 567 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy2g1718 661 SMART B3_2 126 228 IPR003340 GO:0003677
Ahy2g1718 661 SUPERFAMILY DNA-binding pseudobarrel domain 122 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1718 Ahy-Chr2 88593769 88603559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1718 22 546 B3 DNA Binding Superfamily AT1G77850 45.000 4.66e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy2g1718 B3 9.30E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1718 - - adu:107475253 1222.61