LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g1592	ATGGAGGTGGAGCAAGCTAAGCCAAAGCCAACGCCGAAGCGGTTTGTGAAGAACCAAATCCCCGATTCCATCCTCAACGACGCGGCCCTCAACGCCGCCATCTCCGTTCTTCCTCACAACTACAACTTCGAGGTCCACAAATGCGTTTGGCGCGTTCTTTCCACCGGCGCCAAACGCGTTGCCCTTCAGTTCCCCGAGGGCCTCCTCATGTACTCCCTCCCTCTCTCCGACATCCTCACTGCCTTCGCTGCCGTCGACCGCTGCTACGTTCTCGGTGACGTCACCTACGGCGCTTGTTGTGTCGACGACTTCTCTGCCGCTGCGCTCTCTGCCGACCTCCTCATCCACTACGGCCACAGCTGCCTTGTCCCCATCGATTCCACCACCATCCCCTGTCTCTACGTCTTCGTCGACATCAAAATCGACGTTTCCCATTTGGTTGATACCTTTAAATTGAACCTCAAATCTCGCTCCCAGAACCTCGTATTAGCTGGTACTATTCAGTTTGCATCTGCAATTAGGGCTGCGAAGCCGGAATTGGAGAAATCAGGGTTTAGGGTTTTGGTACCGCAGTCCAAGCCTCTTTCGGCCGGTGAGGTTCTTGGCTGCACTGCTCCCAAGGTTTCATTAATGGGTTCGTTTAGTGAGAATCCTGAGAATAGCGTTTTGGTATTTGTAGCTGATGGAAGGTTTCATCTTGAGGCGATCATGATAGCTAATCCTGGGATTAAGGCTTTTAGGTATGACCCTTACATTGGGAGGTTGTTTCTGGAAGAGTATGATCACGTGGGAATGAAGGAATCTAGGAAAGGTGCGATTTTGAGAGCGAGGGAGGAAGCTCGGAATTGGGGTGTTGTTTTGGGGACTTTGGGTAGGCAAGGGAACCCTAAGATTCTGGAGAGATTGGAAAAGAATATGAAGGAAAAAGGGTTCCTTTACACTGTTTTCTTGATGTCTGAGATTAGCCCTGCAAGGATTGCATTGTTTGAGGACTCCGTGGATGCTTGGATTCAGATTGCTTGTCCTCGGTTATCGATTGATTGGGGTGATGCTTTTGGGAAACCAGTGCTCAATCCCTTCGAGGCAGAGATCGCGTTGGGGGTGATACCTGGCTGGTGGGAGAAGAAGAAAAATGTGTTGGTGGCAAAGGTGCAAGAAGGTTGTGAAGATGGTGGTGTAAGTTGCCAGAAGAGTGGTGATTCTTCCTGTGAGTGTAGCTGTGGAGAAGATGAAAATGGAAATGGAAAGAGCGATTTTGGTGGTGAATATCCAATGGACTATTATTCTCAAGATGGTGGGGAGTGGAATTCCTCTTATGTGAAGAAGTCCTCTCGTCCTGTCGGAACACTAGGACGCGTTTTAGATCACCTCAAAAACACCAAGGGATTTTCTCGTAATAGATTAAAATATTTGGTCCTAGATGAGGCGGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACGATTGATTCCTCGTGAGCGGAGAACATTTATGTTTTCTGCTACAATGACTAAGAAGGTCCAAAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGGATTTCTACTTTTGTACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTGTACATGTGA	1644	0.4799	MEVEQAKPKPTPKRFVKNQIPDSILNDAALNAAISVLPHNYNFEVHKCVWRVLSTGAKRVALQFPEGLLMYSLPLSDILTAFAAVDRCYVLGDVTYGACCVDDFSAAALSADLLIHYGHSCLVPIDSTTIPCLYVFVDIKIDVSHLVDTFKLNLKSRSQNLVLAGTIQFASAIRAAKPELEKSGFRVLVPQSKPLSAGEVLGCTAPKVSLMGSFSENPENSVLVFVADGRFHLEAIMIANPGIKAFRYDPYIGRLFLEEYDHVGMKESRKGAILRAREEARNWGVVLGTLGRQGNPKILERLEKNMKEKGFLYTVFLMSEISPARIALFEDSVDAWIQIACPRLSIDWGDAFGKPVLNPFEAEIALGVIPGWWEKKKNVLVAKVQEGCEDGGVSCQKSGDSSCECSCGEDENGNGKSDFGGEYPMDYYSQDGGEWNSSYVKKSSRPVGTLGRVLDHLKNTKGFSRNRLKYLVLDEADRLLNEDFEESLNEIIRLIPRERRTFMFSATMTKKVQKLQRVCLRNPVKDFYFCTFSLKWLEVHQWCSLYM*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy2g1592	547	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	472	480	IPR000629	-
	Ahy2g1592	547	PANTHER	2-(3-AMINO-3-CARBOXYPROPYL)HISTIDINE SYNTHASE SUBUNIT 1	5	444	-	-
	Ahy2g1592	547	Gene3D	Diphthamide synthesis DPH1/DPH2 domain 1	55	137	IPR042263	-
	Ahy2g1592	547	Gene3D	Diphthamide synthesis DPH1/DPH2 domain 3	262	363	IPR042265	-
	Ahy2g1592	547	SMART	ultradead3	118	540	IPR014001	-
	Ahy2g1592	547	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	417	526	IPR014001	-
	Ahy2g1592	547	Gene3D	-	431	526	IPR027417	-
	Ahy2g1592	547	Pfam	Putative diphthamide synthesis protein	64	373	IPR016435	GO:0017183\|GO:0090560
	Ahy2g1592	547	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	447	525	IPR027417	-
	Ahy2g1592	547	SFLD	Radical SAM 3-amino-3-carboxypropyl Radical Forming	9	443	IPR016435	GO:0017183\|GO:0090560
	Ahy2g1592	547	TIGRFAM	diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain	41	366	IPR016435	GO:0017183\|GO:0090560
	Ahy2g1592	547	Pfam	DEAD/DEAH box helicase	446	515	IPR011545	GO:0003676\|GO:0005524
	Ahy2g1592	547	Gene3D	Diphthamide synthesis DPH1/DPH2 domain 2	138	261	IPR042264	-
	Ahy2g1592	547	PANTHER	DIPHTHAMIDE BIOSYNTHESIS PROTEIN	5	444	IPR016435	GO:0017183\|GO:0090560

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g1592	Ahy-Chr2	84917087	84925206	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g1592	447	546	Eukaryotic Initiation Factors Gene Family	AT3G13920	31.579	2.69e-08	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g1592	K07561		-	gmx:100797181	672.159