LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g1486	ATGACAAAGATGTATCAATTTCTTGTGCAACGTTCAAGGCCTTTTCTTTCACAAAGATTTTTCTCTCAGTTTTCTTGTGCATCTTCGTCATCATCACCACCTCTCACTAACAACATGTCCACCACTTCTGGTCTCGTCATTCCCTGCAAAGCTGCTGTTGCATGGGAAGCAGGGAAACCACTGGTGATAGAAAAAGTGGAGGTGGCTCCGCCACAGGCCATGGAAGTGAGGATCAAGGTTAAATATACCTCACTCTGCCATACTGATCTCTACTTCTGGGAGGCCAAGGGACAAACTCCATTGTTTCCCCGAATTTTCGGCCATGAGGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCACAGACTTGCAGGTTGGGGATCATGTGCTTCCAGTATTCACCGGTGAATGTGGTGAATGCGCTCATTGCAAATCCGAGGAAAGCAACATGTGTGACCTCCTGAGAATAGATACAGAGAGAGGAGTCATGCATAGTGATGGTAAAAGCAGGTTTTCCATTAATGGTACGCCAATAAACCACTTTGTTGGCACGTCCACGTTTAGTGAGTACACTGTGATACATTCTGGATGCTTGGCAAAGCTCAATCCACTGGCACCAATGGATAAAGTATGTGTCCTCAGTTGTGGTATCTCAACAGGATTGGGAGCAACTTTGAATGTAGCAAAACCAAAGAAGGGTTCTACAGTGGCAGTGTTTGGTCTTGGAGCTGTTGGACTTGCTGCTGCTGAGGGTGCCCGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAACCCAAACAGGTTTGAAGAAGCAAAAAAATTTGGAATAACCGATTTTGTGAATCCACAGGACTATGATAGGCCAGTTCAACAGGTGATTGCGGAAATGACCAATGGAGGAGTTGATCGAAGTATAGAGTGCACTGGAAACATTAACGCAATGATATCTGCTTTTGAATGTGTTCATGACGGATGGGGTGTTGCTGTGCTTGTTGGAGTTCCAACTAAGGATGCAGTTTTCATGACCAAGCCCATTAATTTGCTCAACGAAAGAACACTAAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACCGATCTTCCATCTGTGGTCGATATGTATATGAACAAGAAATTGGAATTGGACAAGTTTATAACCCACAGAGTTCCTTTCTCTGAAATCAACAAGGCATTTGATCTAATGTTGAGAGGGGAGGGACTAAGGTGTATCATTAGTATGGAAGACTAA	1257	0.4391	MTKMYQFLVQRSRPFLSQRFFSQFSCASSSSSPPLTNNMSTTSGLVIPCKAAVAWEAGKPLVIEKVEVAPPQAMEVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTERGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVIHSGCLAKLNPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPNRFEEAKKFGITDFVNPQDYDRPVQQVIAEMTNGGVDRSIECTGNINAMISAFECVHDGWGVAVLVGVPTKDAVFMTKPINLLNERTLKGTFFGNYKPRTDLPSVVDMYMNKKLELDKFITHRVPFSEINKAFDLMLRGEGLRCIISMED*	419

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy2g1486	418	CDD	alcohol_DH_plants	47	414	-	-
	Ahy2g1486	418	PANTHER	ALCOHOL DEHYDROGENASE 1-LIKE	41	416	-	-
	Ahy2g1486	418	Pfam	Alcohol dehydrogenase GroES-like domain	75	199	IPR013154	-
	Ahy2g1486	418	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	107	121	IPR002328	GO:0008270\|GO:0016491
	Ahy2g1486	418	Gene3D	-	221	359	-	-
	Ahy2g1486	418	SUPERFAMILY	GroES-like	366	414	IPR011032	-
	Ahy2g1486	418	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	207	381	IPR036291	-
	Ahy2g1486	418	Pfam	Zinc-binding dehydrogenase	244	374	IPR013149	-
	Ahy2g1486	418	Gene3D	-	57	408	-	-
	Ahy2g1486	418	SUPERFAMILY	GroES-like	42	224	IPR011032	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g1486	Ahy-Chr2	78911629	78916370	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g1486	75	408	Monolignol Biosynthesis Gene Families	AT1G72680	22.714	3.63e-11	62.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g1486	K18857		-	egr:104426870	688.337

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