Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1419 ATGGAAGGTCGCCGGAGGATAACACTTTATGATCAAATAACCGCTGGCAAAACCACCTCCCTAGCAGATTTGATCCTTCACGACAGTGTCACCGCCGTCTCTGCCGCCGCCGCAGACACCACCGCCGCCACTGCCGATTCTGAAAGCTGCGAGTTGAGCCAAAGCCGAACCCTCGTAGATATCCTCCGCGAAGATAAACACAACAACATCACCACAGCGGACCGCAAATCTAGAAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTCGCACTCAATTCAAGATCAAATTACAGTAATGAAAACAATTCCAGTAACAACGACAACAACAACAACAGCAGCAGCAGCAACAATCATATTGATACCAACCTGTCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCCACGACTCACCGACAGCAAAACGTCGCCATTGCTACTGCCGCCGCCGCAGACACTGAAATCCCGGCGGAAGTCGCGGTGGTGGGACCGGTTGGCGTGTCGCTAATGGATTTGTTGGAGGAAACGGACATGGAAACGGGATTCGAAGTTTCGAGTTACAGAATGAGCAATGCTGATTTTGAAGATGTGATTGAATGTGTAGAAGAAAAGTGCGAAGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGTGCGGCTTTTATACCCTGCGGGCACACGTTCTGCAGGCTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGGAACTGCCCTCTCTGCAATAATTTCATTTTGGAAATTCTTGATATTTTCTGA 819 0.5018 MEGRRRITLYDQITAGKTTSLADLILHDSVTAVSAAAADTTAATADSESCELSQSRTLVDILREDKHNNITTADRKSRKSFSFMDKLRFKLALNSRSNYSNENNSSNNDNNNNSSSSNNHIDTNLSELQARIDPDELTQQDATTHRQQNVAIATAAAADTEIPAEVAVVGPVGVSLMDLLEETDMETGFEVSSYRMSNADFEDVIECVEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1419 272 ProSiteProfiles Zinc finger RING-type profile. 224 262 IPR001841 -
Ahy2g1419 272 CDD RING-HC 224 261 - -
Ahy2g1419 272 SUPERFAMILY RING/U-box 223 268 - -
Ahy2g1419 272 MobiDBLite consensus disorder prediction 97 121 - -
Ahy2g1419 272 PANTHER OS01G0917900 PROTEIN 2 134 - -
Ahy2g1419 272 PANTHER OS01G0917900 PROTEIN 100 272 - -
Ahy2g1419 272 Pfam Zinc finger, C3HC4 type (RING finger) 221 265 - -
Ahy2g1419 272 SMART ring_2 224 261 IPR001841 -
Ahy2g1419 272 PANTHER OS01G0917900 PROTEIN 2 134 - -
Ahy2g1419 272 PANTHER OS01G0917900 PROTEIN 100 272 - -
Ahy2g1419 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 271 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1419 Ahy-Chr2 75224100 75224918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1419 1 272 C3H Transcription Factor Family AT3G25030 36.934 1.83e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1419 - - gmx:100802736 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1652 12 89651926 89653524 Ahy2g1419 2 75224100 75224918 hybridization