Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1355 ATGGCAGATCCTTACTCTAATTTTTTCAGAGGCTTCTTCCACCATAACAATAACCATGACCATTTCAATTATAATCCCACTCCTCCTCCGTCTTCCTCTCACCACCACCACCACCATCCTTATCTTCACAACTTCATCAAAACCACCAATTACAACAACAATAATAATAGCACCTTTTTCCACCATCACCACCACCGTCACCATCAAATTACAACTGCCACTTCTTCTTCTTCTTCTTCTTATTCTTATTATTCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCTCTCCCACTTCTCAGTCTTAGTCCAGCAAACCAAGAACGCGACGAACATCACTATCATCATCACCATGATGATTATACTCATCAACAAGATCATAGTCTTTCCACCACCACCTGCACTGCCATGGATACTAGTTTTGTCCTCGTCCACGACAAAATGGAAGAGGACATCAGAATCTATGGCGGTCGCAACAAGCCCAAAGGCGAGGCGAAAGGGGAGGACGACAACAACGACGAAGACAAAGACGACGAAGAAGAAGACAACAACAATAGTGTGACGGTTGCACTTCACATAGGGTTACCAAACCCTAGTGCTGCTGAACTGGCAACAATTACCTCCATGGAATCTTCTTCTAACAATAATAACAATAGCAATTCATCATCAACGGAGAAAGAACAACATCATCATGAGGAAGAAGGAGAAGGGAGTGAAGAGTCGCAGTGTCATAAAGGGTTCTTGGGTACAAGACTCAACAAGGGACAGTACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTACAAAACTTTCAACAGATACAACAATATGCAAATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACTCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGGACGCATGAGAAGAATTGTGGCAAACTTTGGTATTGCATCTGTGGATCCGATTTTAAACACAAGAGGTCGCTTAAGGATCATATAAAGGCTTTTGGGAGTGGACACGCCGCGCTTGGGATCCACGGCGGATTATTTGAAGAGGAGGAGGAGCCGGCATCTGAAGTCGAACAAGATAATGATGAACTCAACCAGTAA 1308 0.4503 MADPYSNFFRGFFHHNNNHDHFNYNPTPPPSSSHHHHHHPYLHNFIKTTNYNNNNNSTFFHHHHHRHHQITTATSSSSSSYSYYSSPPSPPLREALPLLSLSPANQERDEHHYHHHHDDYTHQQDHSLSTTTCTAMDTSFVLVHDKMEEDIRIYGGRNKPKGEAKGEDDNNDEDKDDEEEDNNNSVTVALHIGLPNPSAAELATITSMESSSNNNNNSNSSSTEKEQHHHEEEGEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAALGIHGGLFEEEEEPASEVEQDNDELNQ* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1355 435 PANTHER ZINC FINGER PROTEIN WIP2 55 432 IPR043584 GO:0003700|GO:0010468
Ahy2g1355 435 MobiDBLite consensus disorder prediction 169 183 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 223 240 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 71 87 - -
Ahy2g1355 435 SUPERFAMILY beta-beta-alpha zinc fingers 240 293 IPR036236 -
Ahy2g1355 435 Coils Coil 416 435 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 153 168 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 208 242 - -
Ahy2g1355 435 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Ahy2g1355 435 Gene3D Classic Zinc Finger 333 408 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 153 183 - -
Ahy2g1355 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 298 IPR013087 -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 65 90 - -
Ahy2g1355 435 MobiDBLite consensus disorder prediction 208 222 - -
Ahy2g1355 435 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 55 432 - -
Ahy2g1355 435 Gene3D Classic Zinc Finger 270 293 - -
Ahy2g1355 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 375 IPR013087 -
Ahy2g1355 435 SUPERFAMILY beta-beta-alpha zinc fingers 336 375 IPR036236 -
Ahy2g1355 435 SMART c2h2final6 271 293 IPR013087 -
Ahy2g1355 435 SMART c2h2final6 355 375 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1355 Ahy-Chr2 71408754 71413314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1355 186 431 C2H2 Transcription Factor Family AT3G57670 75.486 1.12e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy2g1355 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1355 - - aip:107628393 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1595 12 86366564 86371102 Ahy2g1355 2 71408754 71413314 hybridization
Ahy16g0384 16 7460608 7462602 Ahy2g1355 2 71408754 71413314 PCT
Ahy6g0940 6 12269683 12271634 Ahy2g1355 2 71408754 71413314 PCT
Ahy2g1355 2 71408754 71413314 Ahy16g0384 16 7460608 7462602 PCT
Ahy2g1355 2 71408754 71413314 Ahy6g0940 6 12269683 12271634 PCT