Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1293 ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAATTCGACTGGGATGGCGAGATGCGGTTTGCCCTAGCTGTAATGAGGGATTTATTCAGGAACTTAATGATATGGTGCATGTTAACCCTCTGGAATTCTTTGGACTAGATAACAATGAAGAGCATGACCAAAGATTTGGACTTATGGAAACTTTCTCTTCCTTTATGCGGCAGCAAATGGCAGACAGAAGTCATAGCCATGATATCAGGGCACAGTCGGAATCTATTTCGGAGCATGGGGCAGGTTTTGCTCCTTTGTTGATATTTGGTGGTCAAATTCCTTTTAGATTATCTGGACATGGTGGTTTTGAGGCTCTCTTTAATGGGACTCCAGGTATTGGTCTTACACGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTCTCAGCTAATACTCGCCAAGGACCTCCACCTGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAAGTTACACAGAGGCATCTTCGTTCGGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTAGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCGGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATTGAGTGGTAACCAAGGCTCGAATGGCCGAAGTAGAGGTAACTTTAGTGGCAGCACCAGTGGTAGGAGTGGTAGGGAGAACCAGGGAAGGCGAAATCCGTTTTCATTTTTGTGGCGTTTCCGCAGTTCTAATTCTAGCAGCAATGATAGAGCAACCCGAAGCAGCTCACCAACACCATCATTCCCCGATAGTAGTCATCACACGGAGTATTCTGGGTGGCCATTTGAATGA 933 0.4566 MSSSRNTHWCYSCRRPIRLGWRDAVCPSCNEGFIQELNDMVHVNPLEFFGLDNNEEHDQRFGLMETFSSFMRQQMADRSHSHDIRAQSESISEHGAGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIDAMPTIKVTQRHLRSDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNQGSNGRSRGNFSGSTSGRSGRENQGRRNPFSFLWRFRSSNSSSNDRATRSSSPTPSFPDSSHHTEYSGWPFE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1293 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 291 - -
Ahy2g1293 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Ahy2g1293 310 MobiDBLite consensus disorder prediction 234 264 - -
Ahy2g1293 310 Pfam Ring finger domain 185 227 IPR001841 -
Ahy2g1293 310 CDD RING-H2_RNF126_like 186 227 - -
Ahy2g1293 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Ahy2g1293 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 291 - -
Ahy2g1293 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Ahy2g1293 310 SMART ring_2 186 226 IPR001841 -
Ahy2g1293 310 MobiDBLite consensus disorder prediction 234 310 - -
Ahy2g1293 310 MobiDBLite consensus disorder prediction 271 301 - -
Ahy2g1293 310 SUPERFAMILY RING/U-box 166 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1293 Ahy-Chr2 65683247 65686145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1293 121 240 C3H Transcription Factor Family AT5G01980 40.323 2.72e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1293 K11982 - gmx:100787523 492.271