Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1278 ATGTGTGGAAAAATTCAAGCTACTGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTAGTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCCCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTTGGAGAAGAGAAAGAATATGCAAGAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTTATTCAACTTGCAAAAGTCAAGTTCTTTCGGGGTCAAGTTGGTCTTCAAAATGTCATGTATGCGACACAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGACTTCAGGCAGAGTATGATTGAGCAAGGTGGCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAGGTTCTCTCCTTGGAAGATGACTTCATGCGTCTAACTAGAAAGTGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATCTTTGGAGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCCATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTTACTCCAAGATTTAAAATTAAAGTGACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCCTATTTGCTTAAGAAATCATGTGCTGATTTGTTTACTGAAGTTCAAAGAGATGCAAGTGTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTGATTGGAAAGAAGTTGCTACTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTACGAGAATTTGTGATGATTCCACCATCATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTTCTCCCAAAAAGGAGCATGACTTACACAAATCTGTTCCTGCTGGAAAAGCTGATGTTGGTATTAAGAAGGAGTCTTCTGATAGTTTTATCAAAACTGAGAAAGATGCTGGTGATTGTGCTGGGATGTTGTGTAAATCCCCAGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTATTTCTGTGGGGAGTGAATTTGTTGGGTTAATTGATGGTGAGCATGGAAAGGAAGAGAAAACTCCCAGCAATGATATTCTTAGGGATGATCTTTTTGCTGAAATCGATATATTGCTTAGCTCAACGGAAAAAGAAACTCAGGAGCTGTTGTCCCATGTTCTTGAAGCACCTTCCCAAAATGGAGAGAAGCTTACCCATGAAAATCATGTTGTGACCTCCAAGAGTAAGAGAAATTTGAATCCTCAGTTTGAAGAGGTTGCTGTTGATGCAGATGGGCGTGGGTTGAAGGTTGCTAAGGTTAATGGAGTTTGA 1671 0.389 MCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFSVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAREGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVDFRQSMIEQGGSGTQPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIHPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASVICGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVTRICDDSTIIAMFELPNYDADDESSPKKEHDLHKSVPAGKADVGIKKESSDSFIKTEKDAGDCAGMLCKSPVLIDFLAEKQPVISVGSEFVGLIDGEHGKEEKTPSNDILRDDLFAEIDILLSSTEKETQELLSHVLEAPSQNGEKLTHENHVVTSKSKRNLNPQFEEVAVDADGRGLKVAKVNGV* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1278 556 Gene3D - 216 379 IPR012340 -
Ahy2g1278 556 CDD RPA1_DBD_A_like 4 58 - -
Ahy2g1278 556 CDD RPA1_DBD_B_like 91 194 - -
Ahy2g1278 556 SUPERFAMILY Nucleic acid-binding proteins 225 357 IPR012340 -
Ahy2g1278 556 Pfam Domain of unknown function DUF223 4 85 IPR003871 -
Ahy2g1278 556 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 25 323 - -
Ahy2g1278 556 Pfam Replication factor-A C terminal domain 244 328 IPR013955 -
Ahy2g1278 556 SUPERFAMILY Nucleic acid-binding proteins 3 63 IPR012340 -
Ahy2g1278 556 Gene3D - 2 63 IPR012340 -
Ahy2g1278 556 PANTHER REPLICATION FACTOR A 1, RFA1 25 323 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy2g1278 556 MobiDBLite consensus disorder prediction 391 412 - -
Ahy2g1278 556 SUPERFAMILY Nucleic acid-binding proteins 71 192 IPR012340 -
Ahy2g1278 556 CDD RPA1_DBD_C 228 357 IPR013955 -
Ahy2g1278 556 Gene3D - 65 201 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1278 Ahy-Chr2 63293445 63301208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1278 3 300 Core DNA Replication Machinery Family AT2G06510 26.183 1.84e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1278 - - adu:107471135 1092.03