Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1269 ATGCAAATGGTGATGCACCTCAATACCAAGAGGAGGTGGGCTGTCACCTCCACACCCATCAAGGATGGCTACGTGGACACATTTGCATTAATGTATTTCCTGGGTTATGAACCATTCTCCAATGGAAAATATTGGAACCGGTTCATTCAGAGCCCCATAAAGCAAGGCCTCGACAGCGGCCATGAGCGCTTCGAGGTATTGATGAAGGCAATTTCGTTAAGAAGAACAAAAGACAATGAATTGTTAGGGGTGCCACCAAAAACTATTGAGACTCTATATGTTGAACTTAATGGAGAAGAACGTAAAATGTATAATTGGATAAAAGATGTTTCCAATAACCCAGAGTTGTTGCAAAAGTTAGTTGTAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTGTTATCCTTCAGCAAACATTGTTATCACCCGCTGTACTCACATCTTCTGCCGACTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCTCATTGTCCTCTTTGCCGTGGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCATCTAGAGCTGATAGTACCTCTTCATCCTCATCATCGGATAGAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATTGGTTGTGTTTTCACAATTTCGCAAGGTGTTAGTGTTATTGGAAGTGCCTTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTTGATGACGGCTGAACAGAGGGCTGGTGTTATTGATCAATTTCAAGACACTGAAGAAAATGGACTGACCGTTCTGCTTGCAAGCCTTAGGGTTTCAGGTGCAGGTGTAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGTTGCAATGCGGCTGTTGAAGAACAGGCAATGGATCGCGTCCATTGCATTGGACAGAAAGAGGCTGTGAGGATTGTTAGATTAGTTGTTCGGGACAGCATTGAGGAAAAGATGCTGATCTTGCAGGAGAAGAGGAGGGGAAGTCATTCTAGTGCCCTGAAGTATAAAGATCTAAATTTCCCTATGTCCATAGAATGA 1110 0.436 MQMVMHLNTKRRWAVTSTPIKDGYVDTFALMYFLGYEPFSNGKYWNRFIQSPIKQGLDSGHERFEVLMKAISLRRTKDNELLGVPPKTIETLYVELNGEERKMYNWIKDVSNNPELLQKLVVTLQECEAYECPICCYPSANIVITRCTHIFCRLCILRIIQSSGSPHCPLCRGALSESDLFSAPIEPSRADSTSSSSSSDRELSSKTSALIKFLKESREQKPTAKLVVFSQFRKVLVLLEVPLKEAGFKTLRIDGLMTAEQRAGVIDQFQDTEENGLTVLLASLRVSGAGVNLTAATTVYFMEPCCNAAVEEQAMDRVHCIGQKEAVRIVRLVVRDSIEEKMLILQEKRRGSHSSALKYKDLNFPMSIE* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1269 369 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Ahy2g1269 369 Gene3D - 1 76 IPR038718 -
Ahy2g1269 369 ProSiteProfiles Zinc finger RING-type profile. 132 172 IPR001841 -
Ahy2g1269 369 Pfam Helicase conserved C-terminal domain 206 320 IPR001650 -
Ahy2g1269 369 Pfam SNF2-related domain 2 110 IPR000330 GO:0005524|GO:0140658
Ahy2g1269 369 SMART helicmild6 237 322 IPR001650 -
Ahy2g1269 369 SMART ring_2 132 171 IPR001841 -
Ahy2g1269 369 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 115 358 - -
Ahy2g1269 369 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 109 - -
Ahy2g1269 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 181 IPR013083 -
Ahy2g1269 369 CDD SF2_C_SNF 206 333 - -
Ahy2g1269 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 358 IPR027417 -
Ahy2g1269 369 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 115 358 - -
Ahy2g1269 369 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 2 109 - -
Ahy2g1269 369 Pfam Zinc finger, C3HC4 type (RING finger) 132 171 IPR018957 GO:0046872
Ahy2g1269 369 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 206 363 IPR001650 -
Ahy2g1269 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 68 IPR027417 -
Ahy2g1269 369 Gene3D - 85 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1269 Ahy-Chr2 62525957 62528507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1269 2 360 RAD5 or RAD16-like Gene Family AT5G05130 46.489 4.63e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy2g1269 Helicase_C 1.00E-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1269 K15711 - gmx:100791783 373.629