LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g1169	ATGGAAAATACAAGGCGATGGTTTAGTAAGTTCAATTCAAAGGACAAAATGAAGTCTTCAAAAAATAAGGAAACTGTAGGAATGACAAAAGAAGGATCCAAACCCCCAACAAATGAAGAGGCACCTTCAAAAGTAACGAAACAGAAAGTTGAAGCAGCAAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGCAGAGCCTACAGGAAAGGAAGGAAAGACGTAATATGCTAGAGAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAGCAACTTGCTTAAGTATTTGGAAAAAAAAGAGACAGAATACATGCGGCTTCAGAGGCATAAGATGGGGACTGATGACTTTGAGCCCCTCACTATGATTGGGAAGGGTGCTTTTGGAGAGGTCAGAGTCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAAAAATCAGAGATGCTTCGCAGAGGCCAAGTTGAACATGTGAAAGCTGAGAGGAACCTACTTGCAGAAGTTGACAGCAATTGCATTGTAAAACTGTATTGTTCCTTTCAAGATGAAGAGAATTTATATCTGATCATGGAATATCTTCCTGGTGGAGATATGATGACATTGCTGATGCGGAAAGATATTCTGACAGAGGATGAGGCCAGGTTCTATGTTGGGGAGACTGTACTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAATTTGCTGCTGGATAGAAATGGTCACATGAAATTATCAGATTTTGGTTTATGTAAACCACTAGACTGCAGTAGTCTTCAAGAAAAGGACTTCTCTATTGGTGTTAACAGAAGTGGAACCCTCCAGAGTGACGGACGTCCAACAGCTCCCAGACGAACACAACAGGAGCAATTGCAGCATTGGCAGAAAAATCGGCGAATGCTTGCTTATTCTACTGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTGTTAAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTGGGGGCCATAATGTATGAAATGCTTGTCGGGTATCCACCCTTTTATTCAGATGAACCAATGTCAACGTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCTGAAGAAGCTAAACTCTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTCTGTAATGTGGAACAGAGGCTTGGAACCAAAGGAGCTGACGAAATAAAGGCTCACCCGTGGTTCAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTGGACAAGCAAACTGAAACTTCATCAAAGGCTGGCCCATGGAGAAAGATGTTGCCATCTAAAGATGTCAACTTTGTTGGCTACACATATAAGAATTTCGAAATCGTGAAGGATCATGAACTACCTGGAATTGCTGAATTGAAGAAAAAGAACACAAAACCTAAAAGACCATCCATTAAAGCCTTGTTTGATGATGAATCAGCTATGGCTGCGAATCAACAGGCAAAGGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAGAAAAGTGGATCACAGTGA	1644	0.4051	MENTRRWFSKFNSKDKMKSSKNKETVGMTKEGSKPPTNEEAPSKVTKQKVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEYMRLQRHKMGTDDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEENLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSSLQEKDFSIGVNRSGTLQSDGRPTAPRRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDKQTETSSKAGPWRKMLPSKDVNFVGYTYKNFEIVKDHELPGIAELKKKNTKPKRPSIKALFDDESAMAANQQAKGSFLNLLPPQMEVPEKSGSQ*	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy2g1169	547	MobiDBLite	consensus disorder prediction	526	547	-	-
	Ahy2g1169	547	ProSiteProfiles	Protein kinase domain profile.	119	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy2g1169	547	Gene3D	Phosphorylase Kinase; domain 1	109	204	-	-
	Ahy2g1169	547	Gene3D	Transferase(Phosphotransferase) domain 1	205	435	-	-
	Ahy2g1169	547	SMART	serkin_6	119	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy2g1169	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	238	250	IPR008271	GO:0004672\|GO:0006468
	Ahy2g1169	547	ProSiteProfiles	AGC-kinase C-terminal domain profile.	419	491	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ahy2g1169	547	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	42	521	-	-
	Ahy2g1169	547	Pfam	Protein kinase C terminal domain	437	481	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Ahy2g1169	547	MobiDBLite	consensus disorder prediction	1	48	-	-
	Ahy2g1169	547	Pfam	Protein kinase domain	121	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy2g1169	547	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Ahy2g1169	547	MobiDBLite	consensus disorder prediction	1	28	-	-
	Ahy2g1169	547	SMART	pkinase_C_6	419	483	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Ahy2g1169	547	Coils	Coil	61	88	-	-
	Ahy2g1169	547	CDD	STKc_NDR_like	117	482	-	-
	Ahy2g1169	547	SUPERFAMILY	Protein kinase-like (PK-like)	95	465	IPR011009	-
	Ahy2g1169	547	PANTHER	SERINE/THREONINE-PROTEIN KINASE	42	521	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g1169	Ahy-Chr2	45700551	45711346	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g1169	1	543	AGC Kinase Gene Family	AT3G23310	82.051	0.0	914

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Ahy2g1169		Pkinase	4.90E-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g1169	K08790		-	gmx:100795087	1031.94

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy12g1262	12	41014904	41026850	Ahy2g1169	2	45700551	45711346	hybridization
	Ahy16g1376	16	27385166	27390055	Ahy2g1169	2	45700551	45711346	PCT
	Ahy6g0083	6	1144336	1149123	Ahy2g1169	2	45700551	45711346	PCT