LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g0841	ATGGCCACTTCCGCCGCCACCGCCACAACTGACGCAGTGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGTGACTTCCAGATGGAATGCTACGTCTTCAAATGCCGAAATGATGTTATTTACATAATTAACCTTGGTAAGACATGGGAGAAGCTCCAACTTGTTGCTAGGATTATTGTTGCTATCGAGAACCCGCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGAATTGTCCTTAAGTTTGCACAATACACTGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAAAGCAAACATCCTATAACGAGTCTCGTCTACTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATTCCGACCATTGCCTTCTGTGATACCGATTCTCCGATGCGCTATGTTGATGTTGGCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGTCTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGTCCGGGGCTTAAGTGGGATGTGATGATGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTACCCCAAAATATGCCATTCAAGATTTTGGTGCTGCTGCTTCCCCGCAGCTGATGGGGAACGGGGGCTGTTACAGCTGA	765	0.4719	MATSAATATTDAVPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMECYVFKCRNDVIYIINLGKTWEKLQLVARIIVAIENPQDIIVQSARPYGQRIVLKFAQYTGANAIAGRHTPGTFTNQKQTSYNESRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMMDLFFYREPEEAKQQEEEELPATPKYAIQDFGAAASPQLMGNGGCYS*	255

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy2g0841	254	Hamap	40S ribosomal protein SA [rps-0].	11	241	IPR027498	GO:0003735\|GO:0006412\|GO:0015935
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	24	42	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	128	145	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	54	63	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	166	180	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	103	120	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	PRINTS	Ribosomal protein S2 signature	145	156	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	Gene3D	-	23	228	-	-
	Ahy2g0841	254	Pfam	Ribosomal protein S2	129	191	IPR001865	GO:0003735\|GO:0005840\|GO:0006412
	Ahy2g0841	254	Pfam	Ribosomal protein S2	27	126	IPR001865	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g0841	Ahy-Chr2	16317532	16319764	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g0841	1	251	Cytoplasmic Ribosomal Protein Gene Family	AT1G72370	76.096	2.63e-139	391

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g0841	K02998		-	gmx:548014	409.453

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