Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0732 ATGGCTTCTAGTAGCTCCGGGTCGCCGTGCGGGGCATGCAAGTTCCTAAGGCGAAAGTGCGCGTCGGATTGCGTATTCGCGCCATACTTCAGCTGGGAAGAAGGGGCGGCAAGATTTGCAGCGATCCACAAAGTGTTTGGTGCAAGCAATGTTTCAAAGATGCTAATGCAGATTCCAAGTCATGAAAGGTGTGAGGCTGTGCTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTCTATGGTTGTGTCTCTCATATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAAGCACAACTAATGCAAGTGAAGGCACAGCTAGCTCATCAAAACATGCAGAATAATCATCATCAGTGGAACAATAATAATATTGGAGTAGGACAAACATTATTATTCAATAATTATAGTAATAATAATCAATTTTGTCCCACTAATAATGATATTAATTACATGCCATCACCCCAAAGTTGTTCACTTGATGAGTCAATTGATCAAAGTAGCATTATTAGTGATGGAATAATGAGCATGCTGAGCACTGTGGAGGATTTCTCATTCCAAGCTTGTTCCAAGAGAAGATCATCATCTTATAATGACACTGATTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATGAGGAATTATAACTAG 660 0.4136 MASSSSGSPCGACKFLRRKCASDCVFAPYFSWEEGAARFAAIHKVFGASNVSKMLMQIPSHERCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAHQNMQNNHHQWNNNNIGVGQTLLFNNYSNNNQFCPTNNDINYMPSPQSCSLDESIDQSSIISDGIMSMLSTVEDFSFQACSKRRSSSYNDTDLGELQELALRMMRNYN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0732 219 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
Ahy2g0732 219 Coils Coil 89 109 - -
Ahy2g0732 219 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Ahy2g0732 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 216 - -
Ahy2g0732 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0732 Ahy-Chr2 12880731 12882862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0732 3 217 AS2 family AT2G42430 52.033 7.52e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy2g0732 LOB 4.10E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0732 K13944 - cpap:110815110 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0862 12 16709747 16712492 Ahy2g0732 2 12880731 12882862 hybridization
Ahy16g0132 16 1335591 1337776 Ahy2g0732 2 12880731 12882862 PCT
Ahy6g1200 6 17650960 17652469 Ahy2g0732 2 12880731 12882862 PCT
Ahy2g0732 2 12880731 12882862 Ahy16g0132 16 1335591 1337776 PCT
Ahy2g0732 2 12880731 12882862 Ahy6g1200 6 17650960 17652469 PCT