Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0727 ATGGAATTCTACAATAACCTAGAAGACTACTCGAAGAGTTCGTCGAGCGAAGAAACCGATCGGTCGTCGTACGAGCAAGCTGGAGATCATCAAGAGATGGGAACAGGAAGATCTTATGAGTGTGTGTTTTGCAAGAGGGGATTCACCACAGCACAAGCTTTGGGTGGACACATGAACATTCATAGAAAAGATAGAGCCAATAACAAAGCCAAAATTCCAGCTTCTAGTTCAAGCAAGGTTGACGATGAGAACTACTATGCAGATCTAGGGCACTATTCATCACCAATTCCAAGCTATCTTGCAAGAAATGGAAATTATCATGAGGTAGAAAATCATAATAATAATAATAACCCTTACCTTCCAATTTATTTTCCTCCACACACTAATTCCCATCATGTGCAATATAATGAGATTTTGTGTGTAGAAAACCAAAGGGAAAATGGGAAATTAGTGTTTGGACAAGATTGGAGGCAAAGGGGTAATAATTTGAGTTTGTACACTAATAATAATCCAATATGTGTACATGAGAATAATAATCACATGATAAAAGACAAGGGTGAAGATGGTGGCCTTGATTTGGAGCTTAGACTTGGTCATTATCCATAA 606 0.3812 MEFYNNLEDYSKSSSSEETDRSSYEQAGDHQEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKAKIPASSSSKVDDENYYADLGHYSSPIPSYLARNGNYHEVENHNNNNNPYLPIYFPPHTNSHHVQYNEILCVENQRENGKLVFGQDWRQRGNNLSLYTNNNPICVHENNNHMIKDKGEDGGLDLELRLGHYP* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0727 201 Gene3D Classic Zinc Finger 11 90 - -
Ahy2g0727 201 Pfam C2H2-type zinc finger 39 63 - -
Ahy2g0727 201 MobiDBLite consensus disorder prediction 13 27 - -
Ahy2g0727 201 MobiDBLite consensus disorder prediction 1 31 - -
Ahy2g0727 201 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Ahy2g0727 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Ahy2g0727 201 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Ahy2g0727 201 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 5 201 - -
Ahy2g0727 201 PANTHER OS07G0101800 PROTEIN 5 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0727 Ahy-Chr2 12680616 12681909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0727 39 147 C2H2 Transcription Factor Family AT5G43540 38.532 3.24e-14 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy2g0727 zf-C2H2_6 1.80E-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0727 - - ahf:112718298 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0856 12 16584062 16585454 Ahy2g0727 2 12680616 12681909 hybridization