Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0565 ATGGCTATTATAACAACAACAAAGAGGAGTGAACGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCAAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCGTCCAATGTATACTATAATGCCAATTCGACATATAAGCATTCGAAGATGGCCAGTTCCTCTGCTAAGAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAGGGCTGTTGAGTATAGACCAGAAGCTATGTCTGTTGAGAAGCCAACTAAGTGTGAACAAAAGGCTGTTGCAGATGTGGAAGATGTGGCCACTGTTGCTAAGTGTGAACAAAAGGTTGTATTGATTGAAAAGACTGCAGACGTAGAAGATGTGACCACTGTTGCTAAGGCTTCTGTGGGTAAATCACGCAATATTTGCAAAGATTGGATGACTGACAATTGTGTGCATGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGCGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGGATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTCACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAAGTGGTCATAGTAAACCTGTGGTTTCTCTTGCTATTGGATGTCACAAGATGCTTTATTCTGGATCCATGGACCATACCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAACGGCCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTTCTTGTTATCGGCTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACGAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCCAAACCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTGGGATAGGCCCTGGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTAAATGTGTGGAAATGGTTAGAAGAGCCTAAGGTGCCAACATAG 1395 0.4409 MAIITTTKRSERFRRTTPPTCKYWQAGRCNRNPCQFSHSLPTSPSNVYYNANSTYKHSKMASSSAKKAFKKPENCALRAVEYRPEAMSVEKPTKCEQKAVADVEDVATVAKCEQKVVLIEKTADVEDVTTVAKASVGKSRNICKDWMTDNCVHGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVHMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLSGHSKPVVSLAIGCHKMLYSGSMDHTIKVWDLDTLQCTMTLNGHTDVVTSLICWDNFLLSASSDCTVNVWVCTEEGTLEVTYTHTHENAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFGIGPGGLFFTGDGTGLLNVWKWLEEPKVPT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0565 464 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Ahy2g0565 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Ahy2g0565 464 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Ahy2g0565 464 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Ahy2g0565 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 297 331 - -
Ahy2g0565 464 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 462 - -
Ahy2g0565 464 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Ahy2g0565 464 Pfam WD domain, G-beta repeat 333 367 IPR001680 GO:0005515
Ahy2g0565 464 Pfam WD domain, G-beta repeat 171 207 IPR001680 GO:0005515
Ahy2g0565 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 207 - -
Ahy2g0565 464 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Ahy2g0565 464 SUPERFAMILY WD40 repeat-like 159 455 IPR036322 GO:0005515
Ahy2g0565 464 Gene3D - 152 292 IPR015943 GO:0005515
Ahy2g0565 464 Gene3D - 293 462 IPR015943 GO:0005515
Ahy2g0565 464 ProSitePatterns Trp-Asp (WD) repeats signature. 315 329 IPR019775 -
Ahy2g0565 464 PANTHER - 14 462 IPR044715 -
Ahy2g0565 464 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Ahy2g0565 464 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Ahy2g0565 464 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Ahy2g0565 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 367 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 168 207 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 247 284 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 418 455 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 331 368 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 374 415 IPR001680 GO:0005515
Ahy2g0565 464 SMART WD40_4 290 328 IPR001680 GO:0005515
Ahy2g0565 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 337 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0565 Ahy-Chr2 8069706 8072057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0565 174 415 Acyl Lipid Metabolism Gene Families AT3G18860 24.806 2.38e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy2g0565 WD40 0.0044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0565 - - ahf:112726849 741.88