Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0563 ATGGAAGCAGCTACAGCAACTACTACTTCCTCTCAGTCTCGCCAGAGAAAGCTGAAGAGAAAGCGCGCCGCCGCGTTGGCGAGTGACCCCCATCTCGAGCGACTTAACTCGCTGCCCTGGAACCCTTCGTTTCCACGAAACAATGACGAAGATGATAACAACAACGAAAACGATCCCTTTGCTATGCTCGCTACTGGCTCAAACGAGCTCGAAGGAGGTTTCCTCTCGCTCGAGGAGATCGACGAGGCTGATTACGGTTTTTCCATTCCTGAACCTCAAATTAACGAGAAGAAGAACCAGAAGAAGAATCATAAACTCGACGAGAATGTGATAGAAGAGAAGAAGAAGAAGGAAGAAGAAGAAGGAGATGATGGAGTTGGCGGTGGCGGCGGCGGCGGTGGTGGTAGCGGTGAGGTTGAAGTGAAGAAGGAAAAGAAAAAAGACAAGAAGAAGAAGAAAAAAAAGAAGACAAAGAAGAATAAGAAGAAGAAGGAGGAGGAAAAGGAAAAGGAAGAGGAAGCGGTTACCGAAAACCAGAATGTTGAGAAGCCAGATACTGGTCTAGATACTGATGTGAAGGATGATGATGATGTTGGGGAAGACTTTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTTTGCTGATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCAACGCCAATTCAGAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTATTTTGGAGGAACGGGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTAAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTAATTGTTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCAGTAGCTAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGGGGAATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGACCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAAGTGGAGAAAAGCATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGTCAAATATCTCCGCTGAAGATAATTCTCAACATGCACAAAATTGTGTTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAGCGCGGTTTAGTAAAACAAAAACAATCATTCACAGAGGAACTGAATTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAACCCGTCAATATTGGCAACCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTACTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGCATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGTTTTCGTGAAAGTGAAAATGGCATACTAGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCGCATTCAGCAGAGGTTTATGTGCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACGGCAAAGTTTGCTTCGCTGCTCAAATCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGATTTTAAAACGATTGTCTCTTGCACGCCAAATTGACAAAATAACACGAAAGAATTCGCAGGTGAAAGCTGAGAAAAACTGGTTTGATCGAAATGCTAACTCAGTTGAATTAGTTACTGAAAATGACGACAGTGAGGAGGAACAAGTGAACAAACACAAGCAAATGAAAGCCAGTTCTAAACAGTTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAACTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTCCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACAGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAAAAAGCTAAAACAGGACAATCAATAG 2532 0.4242 MEAATATTTSSQSRQRKLKRKRAAALASDPHLERLNSLPWNPSFPRNNDEDDNNNENDPFAMLATGSNELEGGFLSLEEIDEADYGFSIPEPQINEKKNQKKNHKLDENVIEEKKKKEEEEGDDGVGGGGGGGGGSGEVEVKKEKKKDKKKKKKKKTKKNKKKKEEEKEKEEEAVTENQNVEKPDTGLDTDVKDDDDVGEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGKEPEKYAPTGILRALIVAPTRELAIQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISAEDNSQHAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTEELNSIETLSERAGMRSNAAIIDLTNPSILATKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFRESENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETAKFASLLKSFSKDNFQRFPLQNSYMPEILKRLSLARQIDKITRKNSQVKAEKNWFDRNANSVELVTENDDSEEEQVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKQRNIENRKRKRKEEKKRLRDQRRKQKKKLKQDNQ* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0563 843 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 655 IPR001650 -
Ahy2g0563 843 Coils Coil 146 181 - -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 1 67 - -
Ahy2g0563 843 Coils Coil 810 843 - -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 809 843 - -
Ahy2g0563 843 SMART helicmild6 534 615 IPR001650 -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 146 161 - -
Ahy2g0563 843 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 94 764 - -
Ahy2g0563 843 SMART ultradead3 227 467 IPR014001 -
Ahy2g0563 843 Coils Coil 94 123 - -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 813 835 - -
Ahy2g0563 843 Gene3D - 492 730 IPR027417 -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 162 190 - -
Ahy2g0563 843 Coils Coil 711 731 - -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 95 124 - -
Ahy2g0563 843 Pfam Helicase conserved C-terminal domain 506 614 IPR001650 -
Ahy2g0563 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 403 IPR027417 -
Ahy2g0563 843 CDD SF2_C_DEAD 495 624 - -
Ahy2g0563 843 Pfam DEAD/DEAH box helicase 232 440 IPR011545 GO:0003676|GO:0005524
Ahy2g0563 843 Gene3D - 140 458 IPR027417 -
Ahy2g0563 843 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 379 387 IPR000629 -
Ahy2g0563 843 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 457 IPR014001 -
Ahy2g0563 843 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 208 236 IPR014014 GO:0003724
Ahy2g0563 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 630 IPR027417 -
Ahy2g0563 843 MobiDBLite consensus disorder prediction 87 198 - -
Ahy2g0563 843 CDD DEADc_DDX24 219 484 - -
Ahy2g0563 843 PANTHER RNA HELICASE 94 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0563 Ahy-Chr2 8049401 8056155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0563 209 655 Eukaryotic Initiation Factors Gene Family AT5G11200 27.389 1.16e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0563 K14805 - gmx:100806018 1068.53