Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0516 ATGAATGTGGTGTTAGGCATGGCTTCTCTACTCCCTCCAACTCCAACTGCCACTGCCACAGTCCAACAGCATTATTGTTATTATTATAATTTGCATAACAACCAAATAGCGGCAATCTGCTGCTTCTCGCCTGCTCACAAAAAACTACTCCCCATCACTTCAAAGAGGAAGAGTAGGAGGGGCCTCATCAGGTGCAATGCTTTCTTTGATGACGTGGCAACCGGTTTGTTGGAGTTGGAGAATGCTCCTTACTTTCAGGGCTTATCGGAGACGCAGCGGTGGTGGATAGTGGCTTTTGGCGGCCTTGCTTGGATTTATTTCACTGCAAGGCCCGGGGTTCTCATCGGCGCCATCGATGCATACCTTCTGGCCCCTCTTCAGCTCGCGCTGGACAGTCTTTCCGGAAGGAGGAACCTCAAGAGGACTGATTTTCTCGTCGGAGAAAAGCTCGGCGAGGGGTCCTTCGGTGTTGTGTACTCTGGTGTACTCCTCCCAAAGAATCTCAATGACTCGCCGGCGGACCAGAAGAGGCCACGACGGCCTCCGCCTCGGTCTGCTCTTGTTCCCCAATCTCAATCTAAGGACAAAGTCATTCTTAAAAAGGTGAAGGTTGAGATCAAAGGGGCCCGAGAATTCGGTGATTTTGAGGAGTGGTTTAACTACAGGCTCGCTAGAGCAGCACCCGAAACATGTGCCGAATTCCTTGGAAGTTTTGTAGCTGATAAGACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCTCACTCTTGGTGATTACATGAAAGATCGCAACTTCCCCTCAAACTTAGAATCCCTCATGTTTGGACGAGTCTTGCGAGGCGCAGACTCTTCTAAGAGAAATGCCTTGATCATCAAGCAAGTAATGCGCCAGATTATTACCTCTCTTAAGAAAATTCACGACACGGGAATTGTTCACAGGGATATAAAGCCAGACAACTTGGTAGTTACTAAGCGTGGTCGGATTAAACTCATTGATTTTGGTGCCGCAACTGACCTACGGATTGGAAAGAATTATGTTCCCAACAAGACACTACTGGATCCTTACTTCTGTCCCCCGGAATTATATGTACTTCCAGAAGAAACGCCGAGTCCTCCACCAGAGCCAATTGCAGCTCTCCTTTCGCCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCGGCTGGGATTGTGCTTCTGCAAATGGCAATACCATCGTTGAGGTCTGCTGCTGCTTTGAGGAATTTCAATCTGGAAATAAAAAGCTGCGGATATGATTTGAAAAAATGGAGAGACTATACTCGCCTCAGGCCTGATTTTCAAATTCTGGATAGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAAGCTTATATCGGAGAGAGGTTACCTGAGAAGAGGACGGTTATCTGCTGCTGCTGCTTTAAGACATCCTTATTTTCTTCTGGGCGGGGATCAGGCAGCTGCAGTCCTCTCGAAATTAAGCTTAGACAGAAAGTGA 1533 0.4716 MNVVLGMASLLPPTPTATATVQQHYCYYYNLHNNQIAAICCFSPAHKKLLPITSKRKSRRGLIRCNAFFDDVATGLLELENAPYFQGLSETQRWWIVAFGGLAWIYFTARPGVLIGAIDAYLLAPLQLALDSLSGRRNLKRTDFLVGEKLGEGSFGVVYSGVLLPKNLNDSPADQKRPRRPPPRSALVPQSQSKDKVILKKVKVEIKGAREFGDFEEWFNYRLARAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLGDYMKDRNFPSNLESLMFGRVLRGADSSKRNALIIKQVMRQIITSLKKIHDTGIVHRDIKPDNLVVTKRGRIKLIDFGAATDLRIGKNYVPNKTLLDPYFCPPELYVLPEETPSPPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSAAALRNFNLEIKSCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLISERGYLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLDRK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0516 510 Gene3D Phosphorylase Kinase; domain 1 131 258 - -
Ahy2g0516 510 Pfam Protein kinase domain 298 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy2g0516 510 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 5 507 IPR044803 GO:0004674|GO:0009579
Ahy2g0516 510 MobiDBLite consensus disorder prediction 168 192 - -
Ahy2g0516 510 SUPERFAMILY Protein kinase-like (PK-like) 141 492 IPR011009 -
Ahy2g0516 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Ahy2g0516 510 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 5 507 - -
Ahy2g0516 510 SMART serkin_6 144 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy2g0516 510 Gene3D Transferase(Phosphotransferase) domain 1 287 493 - -
Ahy2g0516 510 ProSiteProfiles Protein kinase domain profile. 144 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0516 Ahy-Chr2 7366952 7370115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0516 305 406 AGC Kinase Gene Family AT5G04510 34.286 3.64e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Ahy2g0516 Pkinase 4.30E-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0516 - - gmx:100788727 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0615 12 9888186 9891215 Ahy2g0516 2 7366952 7370115 hybridization
Ahy4g1897 4 110216313 110218051 Ahy2g0516 2 7366952 7370115 PCT