LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy2g0516	ATGAATGTGGTGTTAGGCATGGCTTCTCTACTCCCTCCAACTCCAACTGCCACTGCCACAGTCCAACAGCATTATTGTTATTATTATAATTTGCATAACAACCAAATAGCGGCAATCTGCTGCTTCTCGCCTGCTCACAAAAAACTACTCCCCATCACTTCAAAGAGGAAGAGTAGGAGGGGCCTCATCAGGTGCAATGCTTTCTTTGATGACGTGGCAACCGGTTTGTTGGAGTTGGAGAATGCTCCTTACTTTCAGGGCTTATCGGAGACGCAGCGGTGGTGGATAGTGGCTTTTGGCGGCCTTGCTTGGATTTATTTCACTGCAAGGCCCGGGGTTCTCATCGGCGCCATCGATGCATACCTTCTGGCCCCTCTTCAGCTCGCGCTGGACAGTCTTTCCGGAAGGAGGAACCTCAAGAGGACTGATTTTCTCGTCGGAGAAAAGCTCGGCGAGGGGTCCTTCGGTGTTGTGTACTCTGGTGTACTCCTCCCAAAGAATCTCAATGACTCGCCGGCGGACCAGAAGAGGCCACGACGGCCTCCGCCTCGGTCTGCTCTTGTTCCCCAATCTCAATCTAAGGACAAAGTCATTCTTAAAAAGGTGAAGGTTGAGATCAAAGGGGCCCGAGAATTCGGTGATTTTGAGGAGTGGTTTAACTACAGGCTCGCTAGAGCAGCACCCGAAACATGTGCCGAATTCCTTGGAAGTTTTGTAGCTGATAAGACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCTCACTCTTGGTGATTACATGAAAGATCGCAACTTCCCCTCAAACTTAGAATCCCTCATGTTTGGACGAGTCTTGCGAGGCGCAGACTCTTCTAAGAGAAATGCCTTGATCATCAAGCAAGTAATGCGCCAGATTATTACCTCTCTTAAGAAAATTCACGACACGGGAATTGTTCACAGGGATATAAAGCCAGACAACTTGGTAGTTACTAAGCGTGGTCGGATTAAACTCATTGATTTTGGTGCCGCAACTGACCTACGGATTGGAAAGAATTATGTTCCCAACAAGACACTACTGGATCCTTACTTCTGTCCCCCGGAATTATATGTACTTCCAGAAGAAACGCCGAGTCCTCCACCAGAGCCAATTGCAGCTCTCCTTTCGCCAATCTTGTGGCAGTTAAACAGTCCTGATCTGTTTGATATGTATTCGGCTGGGATTGTGCTTCTGCAAATGGCAATACCATCGTTGAGGTCTGCTGCTGCTTTGAGGAATTTCAATCTGGAAATAAAAAGCTGCGGATATGATTTGAAAAAATGGAGAGACTATACTCGCCTCAGGCCTGATTTTCAAATTCTGGATAGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAAGCTTATATCGGAGAGAGGTTACCTGAGAAGAGGACGGTTATCTGCTGCTGCTGCTTTAAGACATCCTTATTTTCTTCTGGGCGGGGATCAGGCAGCTGCAGTCCTCTCGAAATTAAGCTTAGACAGAAAGTGA	1533	0.4716	MNVVLGMASLLPPTPTATATVQQHYCYYYNLHNNQIAAICCFSPAHKKLLPITSKRKSRRGLIRCNAFFDDVATGLLELENAPYFQGLSETQRWWIVAFGGLAWIYFTARPGVLIGAIDAYLLAPLQLALDSLSGRRNLKRTDFLVGEKLGEGSFGVVYSGVLLPKNLNDSPADQKRPRRPPPRSALVPQSQSKDKVILKKVKVEIKGAREFGDFEEWFNYRLARAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLGDYMKDRNFPSNLESLMFGRVLRGADSSKRNALIIKQVMRQIITSLKKIHDTGIVHRDIKPDNLVVTKRGRIKLIDFGAATDLRIGKNYVPNKTLLDPYFCPPELYVLPEETPSPPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSAAALRNFNLEIKSCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLISERGYLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLDRK*	511

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy2g0516	510	Gene3D	Phosphorylase Kinase; domain 1	131	258	-	-
Ahy2g0516	510	Pfam	Protein kinase domain	298	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy2g0516	510	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	5	507	IPR044803	GO:0004674\|GO:0009579
Ahy2g0516	510	MobiDBLite	consensus disorder prediction	168	192	-	-
Ahy2g0516	510	SUPERFAMILY	Protein kinase-like (PK-like)	141	492	IPR011009	-
Ahy2g0516	510	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	318	330	IPR008271	GO:0004672\|GO:0006468
Ahy2g0516	510	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC	5	507	-	-
Ahy2g0516	510	SMART	serkin_6	144	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ahy2g0516	510	Gene3D	Transferase(Phosphotransferase) domain 1	287	493	-	-
Ahy2g0516	510	ProSiteProfiles	Protein kinase domain profile.	144	491	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy2g0516	Ahy-Chr2	7366952	7370115	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy2g0516	305	406	AGC Kinase Gene Family	AT5G04510	34.286	3.64e-09	56.2

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Ahy2g0516		Pkinase	4.30E-19	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy2g0516	-		-	gmx:100788727	702.205

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy12g0615	12	9888186	9891215	Ahy2g0516	2	7366952	7370115	hybridization
	Ahy4g1897	4	110216313	110218051	Ahy2g0516	2	7366952	7370115	PCT

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