Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0478 ATGGCTACTCCCGATGAGAAAGAGAAGATGAGTTTGGGTTTGAGTCTCAGCTTAGGATTATTTGGAGATAATAATAATAATAATAACAATAATAATAAGAACGAAGAGCAAGAAGCTTTGAAGCTCAATCTCATCCAGAAGCCTCTACCTCAATCATTTCCAAACCATAGGCTTTCCTTCAACAACTTGTTTCCTTTTCATGATCTGAGCTCCGACACGAGGTCGTTCCTTCGCGGAATAGACGTCAATTCGGCGCCGACGTTTACGGCGGCGACGGCGGCATGCGAAGACGAGAACGGCGTCTCGTCGCCGAACAGCACGGTGTCGAGCATCAGCGGTAAGCGGAGCGAGAGGGAACCCAACGGAAACGACGAGAACGAACCCGCAGAGAGAGCCTCGTATTCTCGAGGGAGCGACGAAGAAGACGGCGGCGGAATCGGCGGCGATGCCGACGGGGATAGTTCGAGAAAGAAGCTGCGGTTGTCCAAGGAGCAGGCGGTGGTTCTGGAAGAGACCTTCAAGGAGTACAACACTCTCAACCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAGGCCTAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAATTGAAGCAAACTGAAGTTGATTGTGAATACTTGAAAAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCACCACAACTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGTGTAGCCGTCTCGTCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCCGCCCCTGCCTCAGCTAGTCAAAACCAAATGGGCCCTAACGTTCAGCGGCCGGTTCCTGTCAATCCATGGGGAGCAATGTCACTTCAACGCCGGCCGATCGAGAGCCCGACTACCCGGCCATAA 981 0.5097 MATPDEKEKMSLGLSLSLGLFGDNNNNNNNNNKNEEQEALKLNLIQKPLPQSFPNHRLSFNNLFPFHDLSSDTRSFLRGIDVNSAPTFTAATAACEDENGVSSPNSTVSSISGKRSEREPNGNDENEPAERASYSRGSDEEDGGGIGGDADGDSSRKKLRLSKEQAVVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNQMGPNVQRPVPVNPWGAMSLQRRPIESPTTRP* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0478 326 Coils Coil 218 248 - -
Ahy2g0478 326 SMART HOX_1 154 216 IPR001356 GO:0003677
Ahy2g0478 326 SMART halz 212 255 IPR003106 GO:0006355|GO:0043565
Ahy2g0478 326 MobiDBLite consensus disorder prediction 272 326 - -
Ahy2g0478 326 Pfam Homeobox associated leucine zipper 212 246 IPR003106 GO:0006355|GO:0043565
Ahy2g0478 326 SUPERFAMILY Homeodomain-like 142 213 IPR009057 -
Ahy2g0478 326 MobiDBLite consensus disorder prediction 272 301 - -
Ahy2g0478 326 CDD homeodomain 156 213 IPR001356 GO:0003677
Ahy2g0478 326 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
Ahy2g0478 326 Pfam Homeodomain 156 210 IPR001356 GO:0003677
Ahy2g0478 326 Gene3D - 160 210 - -
Ahy2g0478 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 10 315 - -
Ahy2g0478 326 MobiDBLite consensus disorder prediction 96 158 - -
Ahy2g0478 326 ProSiteProfiles 'Homeobox' domain profile. 152 212 IPR001356 GO:0003677
Ahy2g0478 326 MobiDBLite consensus disorder prediction 96 116 - -
Ahy2g0478 326 PANTHER - 10 315 - -
Ahy2g0478 326 MobiDBLite consensus disorder prediction 117 138 - -
Ahy2g0478 326 Pfam HD-ZIP protein N terminus 8 119 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0478 Ahy-Chr2 6709058 6712749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0478 50 318 Homeobox Transcription Factor Family AT3G60390 64.413 7.10e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy2g0478 HD-ZIP_N 3.90E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0478 K09338 - gmx:100798480 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0567 12 9173588 9177310 Ahy2g0478 2 6709058 6712749 hybridization
Ahy2g0478 2 6709058 6712749 Ahy14g2792 14 136205559 136208947 PCT