Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0460 ATGGCTTCTTCCCATGCAATAATCCCAGACAAAGCAACACGTAAAAGGAAGATTGAGATCAAAAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAATTAGGGCTTTTCAACAAGGTCACCGAGCTCTCCATCCTTTGCCAGGCGGAAACCGCCTTGATCGTCTCCTCGCAAATCGGAAAGCTTTACGCCTGCGGATATCCATCGCCGGACGCCGTCATCCACCGTTTCCTCTCCGGAGGAGATCCCGATTCCGGTTCCGGTTCCGCTCTTCCGCAGAGGAACACCGTACGTGCCTTGAAGAAGAAGCAAGAGGAGAAAGTGGAAGTCCTAAGAGCACAATATGAGTCTTTGGAAGAAGCTCTCAAAGAAGAGAAGAAGCGACTCGAAGAGGCTGAGAATGCAAGAAAGAACCATAACAACAATGGCGGTTGCTTAGGGTTTTCATCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTTAAGTTCAAAGAATCCTTGGAACAGTTGAAGGTTAACCTATTTGCAACCGCTGAAAAGAAGATCATGTTCCAAGAATTGATGCCATCACCACTTGTTTCTTCTTCTTCAGTTATGGCTCCAATGCAAACTAGGGTTCCCAATTTCTCTTCAATATTGAACAATTATGGTGGATTCAACGCTGTTCATCATCCACAACAGCAAGAACATTGGGATTATGCTTCTTCTTCTTCTTCTAATTTTTATTCAACCTTGAAGAATAATGTTGGATTCAACGCGGTTCATCATCCACAACAGCAAGCACATTGGGATTATTGGAACAATAATGGAATTGCTAGCAGTAACAATCAGGATTCTTTAGGATCATGCGATTTTGGGAACAATGCTATAATTGCTGCCGCTAAAGGTAATGGTAATAGTAGTTGTTCCTTTTTTCCTAGCATTGGTTTTGGCCATTATTAA 969 0.4355 MASSHAIIPDKATRKRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIVSSQIGKLYACGYPSPDAVIHRFLSGGDPDSGSGSALPQRNTVRALKKKQEEKVEVLRAQYESLEEALKEEKKRLEEAENARKNHNNNGGCLGFSSQWWENPIDDMDLEELVKFKESLEQLKVNLFATAEKKIMFQELMPSPLVSSSSVMAPMQTRVPNFSSILNNYGGFNAVHHPQQQEHWDYASSSSSNFYSTLKNNVGFNAVHHPQQQAHWDYWNNNGIASSNNQDSLGSCDFGNNAIIAAAKGNGNSSCSFFPSIGFGHY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0460 322 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 193 - -
Ahy2g0460 322 PANTHER MADS BOX PROTEIN 10 193 - -
Ahy2g0460 322 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Ahy2g0460 322 Coils Coil 98 146 - -
Ahy2g0460 322 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Ahy2g0460 322 Gene3D - 26 111 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0460 Ahy-Chr2 6427757 6428909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0460 11 206 Type I MADS-box Gene Family AT5G60440 33.333 1.61e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy2g0460 SRF-TF 5.70E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0460 - - ahf:112729126 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0535 12 8620149 8621342 Ahy2g0460 2 6427757 6428909 hybridization