Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0298 ATGTGGTATGGTCCTCCACGCCCAAATAGTAGTGAAGCTGGTGCTTTAGAGATTGCATTGCACGACTTGAAGGGCAGCAGGATACACTGCACGATTCCAAAATCAGTGGTGCGACTGTTCCGGCCCATTCTGTCGGAGGGGCAGCTATATAGTATTTCTTCTTTTATAGTCCAAAAGAACAATATGTGGATGAAGTGCAGCTCGCTTCAGTATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACCGCTCTTTACGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGAGAAGAATTCTATCAGTTGTACCCTATTTGGTTCACTGGTAGATTTGATCCAACCCTATTTAGATGGTGATAAGACTGAACCTCTCATAGTTGCATTCCAACTATTTAGAGCAAAGGAATGGAATGGGAAGATTAGTATTCAGAGTAGTTTTGACACATCTAACATCCACATAAATCCCAATATTAAAGAGGCCGAACTATTTAAAAAGAGTTTGGTGGACAGCACTCAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATTGATGAGCTCAGAAAAGGGATCTGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAACCAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGTTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTGAAAAGTAGTAATTTGAGTGGTAATGAAAATGTCTATAATGTCACAAAAGCTTGCCTTGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTACGAAGGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGAATCTGTCCAAGGTGGACAAGAATCTGTCAATGAGTCTAAGACAGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAAAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGGTTGAGTATTAAGAAAGAAAAGACTCTCTAG 1518 0.4104 MWYGPPRPNSSEAGALEIALHDLKGSRIHCTIPKSVVRLFRPILSEGQLYSISSFIVQKNNMWMKCSSLQYRITLLQRSMVVHIPQPLFTFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLEKNSISCTLFGSLVDLIQPYLDGDKTEPLIVAFQLFRAKEWNGKISIQSSFDTSNIHINPNIKEAELFKKSLVDSTQGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSATKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSNLSGNENVYNVTKACLDEHLIHKYSQSVNEQSTKGLDNVTSLDCTTDVVYLGDDESVQGGQESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPRLSIKKEKTL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0298 505 Pfam Replication factor-A C terminal domain 284 396 IPR013955 -
Ahy2g0298 505 Gene3D - 6 83 IPR012340 -
Ahy2g0298 505 SUPERFAMILY Nucleic acid-binding proteins 12 87 IPR012340 -
Ahy2g0298 505 SUPERFAMILY Nucleic acid-binding proteins 269 403 IPR012340 -
Ahy2g0298 505 CDD RPA1_DBD_B_like 130 219 - -
Ahy2g0298 505 PANTHER REPLICATION FACTOR A 1, RFA1 19 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy2g0298 505 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 19 401 - -
Ahy2g0298 505 SUPERFAMILY Nucleic acid-binding proteins 94 218 IPR012340 -
Ahy2g0298 505 Gene3D - 90 227 IPR012340 -
Ahy2g0298 505 Pfam Domain of unknown function DUF223 18 84 IPR003871 -
Ahy2g0298 505 Gene3D - 236 414 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0298 Ahy-Chr2 3383372 3389772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0298 12 386 Core DNA Replication Machinery Family AT5G08020 25.515 4.28e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0298 - - ahf:112716567 984.171