Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0117 ATGGCTCTGGTGTGTGGTTCCGCGTCGGTGACGTTCCCTTCATCTTCTTTCCCACGTCACAGCCACAGGAATACCTCTTCCTCATTGGTTGGGTTACAATTTCCATTGCACAAGCTGGTATCCTTATCATTATCTCCCTCTTCTTCTTCTTCCAACACCAATGCAAGGATCCTCCGTATCCATTCTCAGCAGCAAGATTCTTCCCTCGTTCCTCCAGAACAAGATCCACGCTTCCTCTGCGTCGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCCGATCATGTTAATACGGAGAAAACATGGTATGTTGTTGATGCTACAGACAAAGTTCTTGGCAGACTGGCATCAACGATTGCTATTCATATCCGAGGGAAAAATCTAGAAACCTATACTCCCAGCGTGGACATGGGTGCATTTGTAATTGTGGTGAATGCTGAAAAGGTTGCTGTATCTGGGAGAAAGAGAACCCAAAAGCTTTACAGGAGGCACTCTGGTAGACCTGGTGGTATGAAAGTAGAGACATTTGCTCAACTGCAGAACAGAATTCCTGAAAGAATTATCGAACATGCTGTTCGTGGCATGCTTCCGAAGGGGAGGCTTGGGAGGAGGCTATTCACCCACCTGAAGGTTTATGAGGGTCCAGATCATCCTCATGCTGCACAGAAGCCCATCGAACTGCCAATTCAGGATAAGAGAATATATTTACAGAGATAA 744 0.4677 MALVCGSASVTFPSSSFPRHSHRNTSSSLVGLQFPLHKLVSLSLSPSSSSSNTNARILRIHSQQQDSSLVPPEQDPRFLCVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLETYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMKVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYEGPDHPHAAQKPIELPIQDKRIYLQR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0117 247 TIGRFAM rplM_bact: ribosomal protein uL13 105 236 IPR005823 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 CDD Ribosomal_L13 111 224 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 62 247 - -
Ahy2g0117 247 SUPERFAMILY Ribosomal protein L13 105 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 Hamap 50S ribosomal protein L13 [rplM]. 111 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 Gene3D Ribosomal protein L13 100 243 IPR036899 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 Pfam Ribosomal protein L13 109 227 IPR005822 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 ProSitePatterns Ribosomal protein L13 signature. 201 223 IPR023563 GO:0003735|GO:0005840|GO:0006412
Ahy2g0117 247 PANTHER RIBOSOMAL PROTEIN L13 62 247 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0117 Ahy-Chr2 1301676 1305087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0117 113 246 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.915 5.77e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0117 K02871 - gmx:100305981 367.466