Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0110 ATGTCCAAGCTCATCTTTAGCATTGCTCTGTTGGTATTGGTCCAAGCCATCATTTCAGTTGATGGCATTCTCCATCATTGGTATTCTGATGCCAATGCAACCTTCTATGGTGACATGGAAGGTAGAGAAACCATGGGGGGTGCATGTGGCTATGGTGATCTCTTTGAGCAAGGGTATGGTCTTATGACCACAGCTGTAAGCCCTGCCCTATTCAACAATGGTTACACATGTGGATCATGTTTTGAGATGAAATGTGTGAACAAGCCCAATTGGAATTATTGCAAAAAGGGCTCAAGCCCAATAAGAGTAACCGTAACAAACTTATGTCCACCAAATTATGGACAAGGTGATGGACATTGGTGCAACCCTCCATATAAGCACTTTGATTTATCAATGAAGATGTTCACAACTATGGCAGAATATAGAGCCGGGATTGTACCTGTTTTATATAGAAGAGTTCCATGCCATAAACAAGGTGGTGTCAAGTTTCAGTTGAAAGGGACACCTTATTGGTTGCTTGTGTTGGTGTTCAATGTTGGTAATGCTGGTGATGTTTCTAGTGTTAGCATCAAAGGGCAAAATGGTAAATGGCTTACTATGTCAAAAAATTGGGGACAAAATTGGTTAATTGGAGTTAACTTGGTTGGACAAAGTTTGTCTTTTAAGGTCACAACTAGTGATAGGAAAACTTTGGTATTTCATCATGTTGCTCCTTCTCATTGGCAATTTGGATCAACCTATGAGGGCAAGCTTAATTTTTAG 762 0.4029 MSKLIFSIALLVLVQAIISVDGILHHWYSDANATFYGDMEGRETMGGACGYGDLFEQGYGLMTTAVSPALFNNGYTCGSCFEMKCVNKPNWNYCKKGSSPIRVTVTNLCPPNYGQGDGHWCNPPYKHFDLSMKMFTTMAEYRAGIVPVLYRRVPCHKQGGVKFQLKGTPYWLLVLVFNVGNAGDVSSVSIKGQNGKWLTMSKNWGQNWLIGVNLVGQSLSFKVTTSDRKTLVFHHVAPSHWQFGSTYEGKLNF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0110 253 SMART dpbb_1 63 150 IPR007112 -
Ahy2g0110 253 PANTHER EXPANSIN-A15 10 253 IPR002963 GO:0009664
Ahy2g0110 253 Gene3D - 160 253 IPR036749 -
Ahy2g0110 253 Pfam Lytic transglycolase 64 150 IPR009009 -
Ahy2g0110 253 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Ahy2g0110 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Ahy2g0110 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Ahy2g0110 253 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Ahy2g0110 253 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Ahy2g0110 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Ahy2g0110 253 Gene3D - 21 156 IPR036908 -
Ahy2g0110 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Ahy2g0110 253 PANTHER EXPANSIN-A21-RELATED 10 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0110 Ahy-Chr2 1218866 1220643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0110 4 253 Expansin Gene Family AT5G39280 55.200 6.08e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0110 - - cpap:110820230 335.88