Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g0042 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTTCACGGAACGCCGGTGTATTACTATTGTCCGCCAGCTTTGGAAGAGCGCGAGTCTCTAACCTCTAACGATGGTAATGGGACAGCTGCTTCATTCACCACTGGACTGCTCATCGGATTGAACTTGGAATCATCCATACCAGATACTTACCAGTCCCCTCCTGCGCCTCTACCGTATGATACTGTCCTGAGAGGTCCTGCATCAACAGATTCTGAGTCAGGTAGAGAAACCATTAGTGGTAGTAGTTTCGAAACTTTAGTTACGTGTGAAGATCTTGAAGAATCAGATTGTAAAGCTCAACCTAAATCGGCACCCTTATCTCCAAGGAAGCCGGAACCTTTAAAATCAAATGAATCTCATGCATTGGTGACAGAAGAAGAGGATGTATGTCCAATTTGTCTAGAAGAATATGATGCTGAGAATCCCAAAACACTGACGAAATGCGACCACCACTTTCACCTGTCATGCATTCTCGAGTGGATGGAAAGAAGCGACTCGTGTCCCATATGTGATCAGGAGATGATCTTTGACCAGCCACTGGATTAG 582 0.4553 MGGCCCSARKPHLHGTPVYYYCPPALEERESLTSNDGNGTAASFTTGLLIGLNLESSIPDTYQSPPAPLPYDTVLRGPASTDSESGRETISGSSFETLVTCEDLEESDCKAQPKSAPLSPRKPEPLKSNESHALVTEEEDVCPICLEEYDAENPKTLTKCDHHFHLSCILEWMERSDSCPICDQEMIFDQPLD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g0042 193 SMART ring_2 142 182 IPR001841 -
Ahy2g0042 193 Pfam Ring finger domain 141 182 IPR001841 -
Ahy2g0042 193 SUPERFAMILY RING/U-box 133 189 - -
Ahy2g0042 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 189 IPR013083 -
Ahy2g0042 193 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Ahy2g0042 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 192 - -
Ahy2g0042 193 MobiDBLite consensus disorder prediction 61 92 - -
Ahy2g0042 193 MobiDBLite consensus disorder prediction 107 133 - -
Ahy2g0042 193 MobiDBLite consensus disorder prediction 78 92 - -
Ahy2g0042 193 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g0042 Ahy-Chr2 462120 464767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g0042 1 193 C3H Transcription Factor Family AT4G00335 60.104 4.83e-78 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g0042 - - adu:107472508 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0079 12 1822412 1825270 Ahy2g0042 2 462120 464767 hybridization
Ahy14g2483 14 130181714 130185802 Ahy2g0042 2 462120 464767 PCT
Ahy4g2195 4 117423915 117427942 Ahy2g0042 2 462120 464767 PCT
Ahy2g0042 2 462120 464767 Ahy14g2483 14 130181714 130185802 PCT
Ahy2g0042 2 462120 464767 Ahy4g2195 4 117423915 117427942 PCT