Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3354 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACGACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATCGGACTCATCGTCTTCTCCAACACTGGCAAGCTCTTTCACTACTCCTCTCACCCCTACAGGATGGATCAAATAATTGAAAAGTACCAACGATCTACAGGGACTCGCATAACGCGCCATGGACATTCCCACCTTCAGGAAGATTTATTGACTGAGATGGCAATGCTGAGGCGTCAAAATCTGAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAGGGCATAGCTTGTCTCCAATATGAAGAATTGACTAAGCTTGAACATGAAGTTCAAAGCTCTGTTGCAAGGGTTCGAAAGCGTCAGAACGAGCTCTTGCAGCAGCAATTGGAGAATCTGCGAAGGAAGGAAAGAATCTTGGAAGATGAAAACTGCAATTTGTCCAATTGGGAGCAGCAAGCTGCTGTATTGGAGTTTGAAAGGGCTGCAGCAAGTAACTGTGGTAATAACAAAGCAGTGATGGATCATCATCAGTTGCCATTCTACGATGATGAGCAAGCTTCTGCTTCTGCTGGCACCATCCTTCAGCTTGGTGCACCACATGTACCGCAGCAGCAGCTTCATCCATATCCATATCTTCAGCTTGCACAGCCCAATGTTCATCATGACTCACTCACTGGACTACTCATGGGGACATCAAAATGGGTGATAGAGAAGGACGGAGGAGATCCCTTCGATGCATGA 807 0.4734 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFHYSSHPYRMDQIIEKYQRSTGTRITRHGHSHLQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIACLQYEELTKLEHEVQSSVARVRKRQNELLQQQLENLRRKERILEDENCNLSNWEQQAAVLEFERAAASNCGNNKAVMDHHQLPFYDDEQASASAGTILQLGAPHVPQQQLHPYPYLQLAQPNVHHDSLTGLLMGTSKWVIEKDGGDPFDA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3354 268 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 212 IPR031050 GO:0005634|GO:0048316
Ahy20g3354 268 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 Coils Coil 137 181 - -
Ahy20g3354 268 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy20g3354 268 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 PANTHER MADS BOX PROTEIN 1 212 - -
Ahy20g3354 268 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Ahy20g3354 268 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Ahy20g3354 268 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy20g3354 268 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy20g3354 268 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3354 Ahy-Chr20 143810114 143812303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3354 1 244 MADS-box Gene Family AT5G23260 45.850 1.29e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy20g3354 K-box 1.80E-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3354 - - adu:107471830 493.812