Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3340 ATGAGTTTGAGCTCCAAAGAGGAAGAAAACAATGCTTTCGTTTCAGCATTGGTACTTTGTTTTAGTCGGATCACTCCTGCAATCATAAATGCAGCCATTGATCTGAATCTGTTTGAGATCATACCATCAAAAGGGATCATGTCTGCCTCGGAAATTGCTTCAAAGCTTCCGATTAAAAAAGAAGACACTGATATGGTGGCAAAGAGGCTGGAGCGCATGCTGCCTTCACTGGCAAGCCACTCGCTTCTAGAATGCTCTATTCGCATTAACCAAGATGGCACCAAAGAAAGAGTTTATGCTCTCTCAAATGTTGGTGCCTACTTCAGATCCTCTCGTCATGAACATGAATATGGCGGCTCCTTGACTCCTCTCTCTGTTCTCTTCCATCGAGTATATGATGACCTTTGGAAGGACGCAAAAGATGCAATTTTGGACCCAAATAACAATCATTTTGAAAGGGTTTATGGAATGCCAATGTTCGAATATTTGAAGACAAACAAAGAAATTAGCCATGTTTTTGACCAAACAATGGCCCAATCTGGCCCACTGGGAATGAAAAGGATCATAAGCCTATACAAAGGTTTTGAGGGAGTGACAACATTGGTTGATGTAGGAGGTGGAATAGGACAAACCTTAAACTTGATCATTTCTGCGTTTCCTTCCATTAAAGGAATTAATTTTGATATGCCTCATGTTGTGAAAAACGCACCATCATATCTAGGGATTGAGCACGTTGGAGGAGACATGTTCGAAAGTGTTCCAAAGGGTGATGCCATTATGCTAAAGCATGTATGTCATAATTGGTCAGATGAAGAATGCGTCAAATTCCTAAGAAACTGCCACGAAGCGTTGCCACAACATGGAAAGGTGATTGTTTTGGACTTCATAATGCCAGAAATCCCGAATTCAAGCAATTCATCAAAACATATTTGTGATGTGGACTACCTCATGTTTATAATTAATGGCGGAAAGGAACGAACCCAGAAAGAATTTGAGAGGCTATGCATCAACTCTGGATTTTCTAGATTCCAAGTTGCTTGCACTACTTCCTTAACTACGTTTGCAGTCATAGAATTTTACAAATAA 1086 0.4033 MSLSSKEEENNAFVSALVLCFSRITPAIINAAIDLNLFEIIPSKGIMSASEIASKLPIKKEDTDMVAKRLERMLPSLASHSLLECSIRINQDGTKERVYALSNVGAYFRSSRHEHEYGGSLTPLSVLFHRVYDDLWKDAKDAILDPNNNHFERVYGMPMFEYLKTNKEISHVFDQTMAQSGPLGMKRIISLYKGFEGVTTLVDVGGGIGQTLNLIISAFPSIKGINFDMPHVVKNAPSYLGIEHVGGDMFESVPKGDAIMLKHVCHNWSDEECVKFLRNCHEALPQHGKVIVLDFIMPEIPNSSNSSKHICDVDYLMFIINGGKERTQKEFERLCINSGFSRFQVACTTSLTTFAVIEFYK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3340 361 SUPERFAMILY "Winged helix" DNA-binding domain 8 111 IPR036390 -
Ahy20g3340 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Ahy20g3340 361 Pfam Dimerisation domain 29 77 IPR012967 GO:0046983
Ahy20g3340 361 Gene3D Vaccinia Virus protein VP39 170 348 IPR029063 -
Ahy20g3340 361 Gene3D - 24 188 IPR036388 -
Ahy20g3340 361 CDD AdoMet_MTases 200 297 - -
Ahy20g3340 361 PANTHER O-METHYLTRANSFERASE 11 361 IPR016461 GO:0008168
Ahy20g3340 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 352 IPR029063 -
Ahy20g3340 361 Pfam O-methyltransferase domain 136 341 IPR001077 GO:0008171
Ahy20g3340 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 361 IPR016461 GO:0008168
Ahy20g3340 361 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 11 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3340 Ahy-Chr20 143680739 143683462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3340 9 347 Monolignol Biosynthesis Gene Families AT5G54160 47.813 6.92e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3340 K13066 - aip:107621172 729.169