Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3308 ATGCGCCATCGCAACGTTCCTCAATCCATGGACCTCGAGATGGAAGCCACAGGATTCGAATCCGAAGAAGAAGAAGAGGAAGAAGACGATGAAGACGACGAAGAAGAACAACATCCACAAACCAATAACAATGACAATAACAACTACAACAACCCTTCTTCCTCCAACTCAAACCCTAACAGCACCACTGAGCCCTACATCGGCATGGAGTTCGACTCCGAGCTATCCGCACGCGCCTTCTACAACGCCTACGCGCGTCGCATCGGCTTCAGCACGCGCGTCAGCGTTTGTCTCCGCTCCCGAAAGGACTCCTCCGTCATCCGCCGCCGTGTTGTATGCTCCCGAGAGGGCTTCCGCCGCAACCCTGAGAACCACGACCCTAAGCGCCACCGCTCCGTGACACGTGTCGGCTGCAAAGCTCAGATCACCGTCAAGAAGAAGGGCCCACTCGGCAAGTGGTACATCTCCAAGTTCATCAAAGACCACAACCACGACCTCGTCCCTCCGGATAGGGTCCACTGCCTCCGCTCCCACCGCCGCGTCAACGGTGCCGCCCGCAGCCTCATCGATACTCTTCACGCAGCTGGCATGGGCGCTGCCGAGGTCATGACGGTGCTCATCAAGGAGTCTGGCGGCATCGACAACGTCGGCTTCACAAAAGTTGACTGCCAGAACTACATGACGTCATCTTCTAAGAGGAGCCTCGGGAGTGGGAACCAGCTTGTCTTCGATTTCTTGAAGAAGATGAGTGAGGAGGATCCTTCTGGATTCTTCTACTCCTTCCAGGGCGATTCGGAGAGTTCCTCAGGTAACATCTTTTGGGCTGATGGCAATGCCAGGAGGAATTATGAATATTTTGGAGATGCTGTTGTTTTCGATATGGCGTATCGGAGGGGACGCTATAAAGTCCCCTTTGCGCCTTTTACTGGATGGAACCATCACGGGCAGCCGGTGCTCTTCGGCTGCGCCCTGATGCTCAATGAATCCGAGGCGTCCTTCGTGTGGCTTTTTACCACATGGCTTCAAGCAATGTACGGCCGGCATCCTGTGTCCATTACTACTGATCAGGACAGGATAATTCACTCTGCTGTCTTGCAGGTTTTCCCGGATACTCGTCACCGGTTCTCCAAGTGGGACGTGTTTGGTGAGGTTCAGGAGAGGCTGATTGATGTGTGTGGAGTGCATCCTGAGTTTGAGTCTGAGTTTCGACGGTGCGTGAACTCGGCAGAGACAGTTGATGAGTTTGAGTCTAGCTGGAAGTTCCTTGTTGGGAGGTATGAGCTTCTGGATAATGAATGGCTTCAGTTGATGTACAGGAATCGCCATCAATGGGTGCCTGTTTATCTCCGCGACACCTTTTTTGGCGATTTGTCTGCCATCCATGGGAGTGATACGAGCAGCTCGTACTTTGATGGGTTTATTAATGCGACGACTACCGTCCAGACACTGATTAAGCAGTATGAGAAAGGAGTCGCGGATCGATATGAGAAGGAAGTGAAGGAGGATTATGATACGCTGAATACCGCACCGGTTTTGAGAACTCCTTCTCCAATGGAAAAACAAGCGGCTGGTCTCTACACGAGGAAAATATTTGCAAGGTTCCAAGAGGAATTGGTTGAGACCCTTGCATATGCTGCTACGTTGATGGATGATGCAAGATCACAAGCTACTTATCGGGTGGCGAAGTACGGGGAGGAGAATAGGGCGCATTTTGTTAGGTTCAATGTCTTCAGGAAGAAAGCTAGCTGCAGCTGCCAAATGTTTGAGTTTGCGGGTCTTGTCTGTAGGCACATATTAGCAGTTTTTAGGGTCATCAATATTCTTACGCTTCCGTCCCATTACATCTTGAAAAGGTGGACAAGAAACGCAAAGAGTATCTTGTTGGATAAAGGAGCACGGGAATTGCAAAATAATCTGGAAGAGTGTTACTCCTCTCGCTACGATAGTTTGAGCCGGGAAATTATGAGTTATGTAGAAATGGGGGCAGAATCATCGGATACTTATAGCGTTGCGCTGAATGGTCTACGCGAGGCTGCGAAAAAGGTTGCGGATGCAAAGAAACCTCGTCCAGCACCCGTGCAAAGTACTTCAGATAATAATGAAAACCATGAGAGTAGTCAATCTAGTGATACAGGAATTCTTGTTTGTGAGGTTTGA 2157 0.5035 MRHRNVPQSMDLEMEATGFESEEEEEEEDDEDDEEEQHPQTNNNDNNNYNNPSSSNSNPNSTTEPYIGMEFDSELSARAFYNAYARRIGFSTRVSVCLRSRKDSSVIRRRVVCSREGFRRNPENHDPKRHRSVTRVGCKAQITVKKKGPLGKWYISKFIKDHNHDLVPPDRVHCLRSHRRVNGAARSLIDTLHAAGMGAAEVMTVLIKESGGIDNVGFTKVDCQNYMTSSSKRSLGSGNQLVFDFLKKMSEEDPSGFFYSFQGDSESSSGNIFWADGNARRNYEYFGDAVVFDMAYRRGRYKVPFAPFTGWNHHGQPVLFGCALMLNESEASFVWLFTTWLQAMYGRHPVSITTDQDRIIHSAVLQVFPDTRHRFSKWDVFGEVQERLIDVCGVHPEFESEFRRCVNSAETVDEFESSWKFLVGRYELLDNEWLQLMYRNRHQWVPVYLRDTFFGDLSAIHGSDTSSSYFDGFINATTTVQTLIKQYEKGVADRYEKEVKEDYDTLNTAPVLRTPSPMEKQAAGLYTRKIFARFQEELVETLAYAATLMDDARSQATYRVAKYGEENRAHFVRFNVFRKKASCSCQMFEFAGLVCRHILAVFRVINILTLPSHYILKRWTRNAKSILLDKGARELQNNLEECYSSRYDSLSREIMSYVEMGAESSDTYSVALNGLREAAKKVADAKKPRPAPVQSTSDNNENHESSQSSDTGILVCEV* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3308 718 MobiDBLite consensus disorder prediction 692 712 - -
Ahy20g3308 718 ProSiteProfiles Zinc finger SWIM-type profile. 574 606 IPR007527 GO:0008270
Ahy20g3308 718 Pfam SWIM zinc finger 580 605 IPR007527 GO:0008270
Ahy20g3308 718 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 55 694 - -
Ahy20g3308 718 MobiDBLite consensus disorder prediction 16 38 - -
Ahy20g3308 718 MobiDBLite consensus disorder prediction 681 712 - -
Ahy20g3308 718 MobiDBLite consensus disorder prediction 41 66 - -
Ahy20g3308 718 Pfam FAR1 DNA-binding domain 80 168 IPR004330 -
Ahy20g3308 718 SMART 26again6 581 608 IPR006564 GO:0008270
Ahy20g3308 718 Pfam MULE transposase domain 290 379 IPR018289 -
Ahy20g3308 718 MobiDBLite consensus disorder prediction 1 66 - -
Ahy20g3308 718 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 694 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3308 Ahy-Chr20 143456088 143460228 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy20g3308 MULE 2.70E-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3308 - - qsu:112029984 911.368