Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3300 ATGGAGAAGGTGGCTCCTCCGATCTTTATGCACCAAGCACTTCAAAGTCGGTTCTGTGATGTACCGATGACTACTACCGCCACCACGAAGAAGCGCGATCTGTCGTACGACGTCGATAAGAGCAGCTCCAACGGTAATTGGAATCCAAACGCGTGGAGCTGGGACAGTGTCAGGTTTATCGGGAAGCCAGTACCGCAGCAAAACGGTGTCGTTTCAGTTGAGGAAGAAACGCTGCGTTTAAATCTCGGTAGCAGTGGTGTTAGTGGCAGCGGCGGAAGCGTTGACCCGAGCGTGTCGCGGCCGAGTAAGAGAGTGCGTTCTGGTTCACCCACCGGAACGGCGTCGTATCCGATGTGCCAGGTGGATAACTGCAAGGAAGATCTGTCAAGTGCAAAAGACTATCATAGAAGGCACAAAGTGTGTGAGCTTCATAGCAAAGCCTCGAAGGCCCCCCTTGGGAACCAAATGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTTCACCCTTTGACGGAGTTTGATGAAGGGAAGCGAAGCTGTAGACGTAGACTGGCTGGGCACAACCGCCGGAGAAGAAAGACCCAACCGGAAGATGTCACGTCGCAGCCTGAGAGTGTGGCTACTGGAAATGCAGAAATCTTCAATTTATTGAGTGCCATAGCAAGTTCACAAGGTAAGTTTGAGGACAGAAGCAAGATTGCGTCACAAGTTCCGGATAAAGACCAGCTTGTTCAGATTCTTAATCGGATACCGTTGCCAGCTGATCTTGCAGCAAAGTTGCTCAATGTTGGCGGTAAAGGTCAAATACAAACTTCATCTTATCATCATGACAAAGTGAACCAGAGCAATTCTGGTCCATTAACGAAGGACTTGCTTGCTGTTCTTTCAACCACTTTATCAGCATCTACTCCCAACTCTCAAAAGAGTAGCCAGAGTAGTGACAGTGAGAAGTCTAGGGCTAGTGCTGACCAAGTTGGTGAAAGTTTACAAATGAGACAATATCCACAAGAATTTGCTTCTGTTGGAGACGAAAGAAGTAGTGGCAGTTCGCAATCTCCAGTTGAAGATTCAGACTTCCCAGAAGTTCGAGTTAATTTGCCACTGCAACTCTTTAGTTCTTCTCCTGAAGTTGGCAACCCGCCAAAATTGACACCTTCGCAAAAGTATTTCTCTTCTGACAGCAGTAATCCTGTGGAAGAGAGGTCACCATCATCTTCCCCTGCTGTGGACAATCAATTCGATTTGCAAGGTGTGGCTAGAGGTCTCAAGGCTGACGGCGTTCCAAGCAGAAGAGAAGTAAATGCAAATAAAGAAGCTAGCCAAAGTCAAAGTTATAATATATCTCTTAATCTCTTTAATGCGCCAAATAGCAGAGTCCAGCCTAGCTCACTTCAAAGTGTTCCATTTCAAGCTGGATATGCATCTTCTGGTTCTGATCACTCACCTCCAAGTTTGAATTCAGATGCTCAGGATCGCACTGGGAGAATAATGTTCAAGCTATTTGACAAAGATCCTAGTCATTTCCCTGGAACACTGCGAACACAGATTTACAATTGGCTTTCTAATAGTCCATCAGATATGGAGAGCTACATTAGGCCGGGCTGCGTGGTACTGTCGCTTTATGCTTCAATGTCCTCTGCTGCCTGGGAGCAACTAGAAGAAAACTTCCTGCAACATGTCCATTCTTTAATTCAAAGCAATTCCGACTTTTGGAGAATTGGAAGGTTTCTGGTTCATTCTGGCAATCAGTTAGCATTACACAAAGATGGAAAAATTCACTTATGCAAGCCATGGAGAACTTGGAGGTCTCCTGAATTGATATCAGTGTCCCCTTTGGCAATTGTTAGTGGACAAGAAACCTCTTTTTCATTGAAGGGTAGAAACCTGTCAAATCCTGGCACCAAGATTCATTGCACAGGTACTGGCGGTTACACGCCCATAAAAGTTGTTGAATCTGCATGTTATGGTATGACCTATGACAAGATAAAATTGAGTGGTATTAAAGTTCAGGATGCTTCTCCTGGTCTTTTGGGTCGCTGTTTTATCGAGGTAGAAAATGGTTTCAAGGGTAGCAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGTAAGGAATTGAGACCACTTGAATCTGAATTCGACAAGGAAGAAAATGCAAGTGATGCCATTTCAGATGAGCATGGATATGATCTTGGAAGACCAAGGTCAAGGGAGGAGACTCTACACTTCCTGAATGAGCTTGGGTGGTTATTCCAAAGAAAAAGGTTCTCATATACGGATTTGGTTCCAGATTATTCACTTGACAGATTCAGATTCATACTTACATTTTCTGTGGAAAGAAATTGCTGTATGCTAGTTAAAACACTCTTGGATATGTTGGTTCAAAAATACTTGGAAGGCCAATGGTCGTCAACGGCATCATTGGAGATGCTCAACGCAATCCAACTCCTGAATAGAGCGGTTAAAAGAAAGTATGTTAACATGGTTGATTTGCTCATTCAGTATGCTGTGCCTAGCAACAATGATGCATCCCGGAAGTACGTATTTCCGCCAAATGTTGCTGGCCCTGATGGTATTACGCCATTGCACTTGGCAGCATGCACATCGTCATCTGAGGGTGTAATTGACTCTTTGACAAATGATCCGCAGGAGATTGGGTTGAACAGCTGGGATTCTCTTCTAGATGCAAATGGGCAGACTCCGCATGCTTATGCCATGATGAGGAATAATCATTCTTATAATGTGCTGGTTGCTCGAAAACTCTCCAATAGAAGAAGAGGCCATGTTTCAGTAACAATTAATAGCGAGATAGAGCATTCATCAATGGACATCGAGCTTAAGCAAAGGCAAAGTGACCAAACCAAAAGAGGTCAGAATTCCTGCACTAAGTGTAGTGCAATGGCGGATGTTCGTTACAGCAGCAGAATCCCTGGTTCACGGAGCTTTGGTCACCACCGACCCTTTATTCATTCGATTCTAGCTATTGCCGCTGTATGTGTCTGTGTCTGTCTGTTCTTGCGAGGACACCCTTGGGTTGGCTCGGTTACGCCCTTCAATTGGGAGAAGTTGGATTATGGCACCATATAA 3084 0.4491 MEKVAPPIFMHQALQSRFCDVPMTTTATTKKRDLSYDVDKSSSNGNWNPNAWSWDSVRFIGKPVPQQNGVVSVEEETLRLNLGSSGVSGSGGSVDPSVSRPSKRVRSGSPTGTASYPMCQVDNCKEDLSSAKDYHRRHKVCELHSKASKAPLGNQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSQPESVATGNAEIFNLLSAIASSQGKFEDRSKIASQVPDKDQLVQILNRIPLPADLAAKLLNVGGKGQIQTSSYHHDKVNQSNSGPLTKDLLAVLSTTLSASTPNSQKSSQSSDSEKSRASADQVGESLQMRQYPQEFASVGDERSSGSSQSPVEDSDFPEVRVNLPLQLFSSSPEVGNPPKLTPSQKYFSSDSSNPVEERSPSSSPAVDNQFDLQGVARGLKADGVPSRREVNANKEASQSQSYNISLNLFNAPNSRVQPSSLQSVPFQAGYASSGSDHSPPSLNSDAQDRTGRIMFKLFDKDPSHFPGTLRTQIYNWLSNSPSDMESYIRPGCVVLSLYASMSSAAWEQLEENFLQHVHSLIQSNSDFWRIGRFLVHSGNQLALHKDGKIHLCKPWRTWRSPELISVSPLAIVSGQETSFSLKGRNLSNPGTKIHCTGTGGYTPIKVVESACYGMTYDKIKLSGIKVQDASPGLLGRCFIEVENGFKGSSFPVIIADATICKELRPLESEFDKEENASDAISDEHGYDLGRPRSREETLHFLNELGWLFQRKRFSYTDLVPDYSLDRFRFILTFSVERNCCMLVKTLLDMLVQKYLEGQWSSTASLEMLNAIQLLNRAVKRKYVNMVDLLIQYAVPSNNDASRKYVFPPNVAGPDGITPLHLAACTSSSEGVIDSLTNDPQEIGLNSWDSLLDANGQTPHAYAMMRNNHSYNVLVARKLSNRRRGHVSVTINSEIEHSSMDIELKQRQSDQTKRGQNSCTKCSAMADVRYSSRIPGSRSFGHHRPFIHSILAIAAVCVCVCLFLRGHPWVGSVTPFNWEKLDYGTI* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 82 114 - -
Ahy20g3300 1027 ProSiteProfiles Zinc finger SBP-type profile. 116 193 IPR004333 GO:0003677
Ahy20g3300 1027 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 1027 IPR044817 GO:0003677
Ahy20g3300 1027 SUPERFAMILY SBT domain 117 197 IPR036893 GO:0003677|GO:0005634
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 183 205 - -
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 298 358 - -
Ahy20g3300 1027 Gene3D - 777 941 IPR036770 -
Ahy20g3300 1027 Gene3D - 110 180 IPR036893 GO:0003677|GO:0005634
Ahy20g3300 1027 Pfam SBP domain 119 192 IPR004333 GO:0003677
Ahy20g3300 1027 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 37 1027 - -
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 298 355 - -
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 461 488 - -
Ahy20g3300 1027 MobiDBLite consensus disorder prediction 370 410 - -
Ahy20g3300 1027 SUPERFAMILY Ankyrin repeat 815 911 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3300 Ahy-Chr20 143387603 143393100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3300 3 1027 SBP-box Gene Family AT1G20980 50.797 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy20g3300 SBP 7.70E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3300 - - lang:109360589 1418.68