Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3296 ATGAAGCGCGACTACTATGAAATCTCCGACGACGAATGGGACCAACACGAAGAACAGTTCAAGCCCTCACGAATCCTCAAGAGACCCAACTCTACTCCTCCTTCTCCTCCTCCCATCGAGTCCTTCGCTTACAACAACAACAACAACAATTGCCATGACGAGGACGACGATTGCGTTGAAATCACTCGCGCTTCCGCAGCTTTTCCGGTCGAATTGGACGATCTGGAGGATGCTGACGTGGATAACAACAATTCCACTGCAGCTGCAGCCCCGAATCGTGGCCGTCGGTTCATCATCGACGATGACGACGAAGATGGCGAGGAAGAGGAAAGTAATCAGAATAGGAATAGGAATGTTGCGGAATTGTATGAAATAGGGTCATCTTCTTCGGAGGAAATTGAGGAAGAAGAGGTTATGGAAGGTGATGTGGTTGGTAGGGCTTTGCACAAGTGCGCAAAGATATCGGCGGAGCTGAAGGGGGAGCTTTTCGGGTCGTCGGTGACTGCATGCGACAGGTATTCTGAAGTGGAGTCTTCTTCAGTGAGGATCGTAACTCAGGACGATGTAGACGTTGCGTGTGGGTATGAGGACGAGGATTCGGATTTTCAACCTCTACTGAAGCCGTATCAGCTTGTTGGTGTCAACTTCTTGCTTCTACTGTATCGGAAGCGGATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGGTTCGTTTGTCTACACAGAGATGCCATTTCTACAAAATATTCCGGTGTTAACTACATGTTTATAATTTATATTCACTCTAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCGTGCTGATGGATGAAGCTCATGCTTTGAAGGACAGAAATAGCTTTAGGTGGAAAAATTTGATGGCTGTTGCACGGAATGCAAACCAACGATTGATGTTGACTGGGACACCACTTCAGAACGATTTACATGAGTTATGGTCGTTGTTGGAGTTTATGATGCCTGATATTTTTGCTACTGAAGGTGTTGACTTAAAAAAGCTGCTCAATCCAGACAATAGAGATTTAATCGGTCGTATGAAGTCTATATTGGGGCCATTTATTTTGCGGCGTTTGAAATCTGATGTAATGCAGCAGCTTGTTCCTAAAATACAGAAGGTTGAATATGTTGTAATGGAAAAGCAACAGGAAAATGCTTATAAGGAAGCCATTGAGGAGTATCGTGCTGTCTCACAAGCTCGGATAGCCAAGTGCTCTGAGCTTAACACCAAATCTGTTCTTGAAGCTCTTCCACGCCGACAAATAAATAACTACTTTGTTCAGTTCAGAAAGATTGCTAACCATCCCTTGCTGATACGGAGAATCTATAATGATGACGATGTCATTCGCTTTGCTAGGAAGTTGCATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTAGACAGAGTTATAGAGGAACTTAAAAGTTACAACGACTTCTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAGAAAAGGGATACTTTCCGAAAACCATGTTATGCTTTCTGCAAAATGTGGGGCCTTGGCAGAGCTTCTTCCTTCACTAAAGAAGGAGGGTCATCGTGTCTTGATCTTTAGTCAATGGACGTCAATGCTTGACATATTGGAGTGGACCTTAGATGTCATTGGGTTGACCTACAAACGACTTGATGGAAGTACACAGGTGGCTGAAAGGCAAACGATAGTTGATACATTCAACAACAATACTTCCATTTTTGCATGCTTGCTATCGACAAGAGCCGGAGGACAAGGTTTGAACTTAACGGGAGCTGACACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGTCATAGAATTGGTCAAACGAAGCCTGTAACCATATACCGGTTGGTAACTAGGGGAACAGTTGATGAAAATGTATATGAGATCGCGAAGAGAAAGTTGGTACTCGATGCTGCTGTCCTCGAGTCCATGGAGGAGGTTAGTGAAGGCAACATGCCTGAGAAAACCATGGGAGAGATATTATCTGCAATTTTGTTGAGTTAA 2349 0.4389 MKRDYYEISDDEWDQHEEQFKPSRILKRPNSTPPSPPPIESFAYNNNNNNCHDEDDDCVEITRASAAFPVELDDLEDADVDNNNSTAAAAPNRGRRFIIDDDDEDGEEEESNQNRNRNVAELYEIGSSSSEEIEEEEVMEGDVVGRALHKCAKISAELKGELFGSSVTACDRYSEVESSSVRIVTQDDVDVACGYEDEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDPGPHLIVCPASVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHRFVCLHRDAISTKYSGVNYMFIIYIHSSPQQKDDRKILKRWRWSCVLMDEAHALKDRNSFRWKNLMAVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEGVDLKKLLNPDNRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQKVEYVVMEKQQENAYKEAIEEYRAVSQARIAKCSELNTKSVLEALPRRQINNYFVQFRKIANHPLLIRRIYNDDDVIRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILSENHVMLSAKCGALAELLPSLKKEGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNNTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTRGTVDENVYEIAKRKLVLDAAVLESMEEVSEGNMPEKTMGEILSAILLS* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3296 782 Gene3D - 470 780 IPR027417 -
Ahy20g3296 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 779 IPR001650 -
Ahy20g3296 782 MobiDBLite consensus disorder prediction 1 48 - -
Ahy20g3296 782 SMART helicmild6 638 721 IPR001650 -
Ahy20g3296 782 MobiDBLite consensus disorder prediction 77 99 - -
Ahy20g3296 782 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 67 780 - -
Ahy20g3296 782 MobiDBLite consensus disorder prediction 1 24 - -
Ahy20g3296 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 763 IPR027417 -
Ahy20g3296 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 424 IPR014001 -
Ahy20g3296 782 SMART ultradead3 202 434 IPR014001 -
Ahy20g3296 782 PANTHER SNF2/RAD54 HELICASE FAMILY 67 780 - -
Ahy20g3296 782 Pfam SNF2-related domain 224 539 IPR000330 GO:0005524|GO:0140658
Ahy20g3296 782 CDD DEXHc_Snf 206 426 - -
Ahy20g3296 782 CDD SF2_C_SNF 606 732 - -
Ahy20g3296 782 Pfam Helicase conserved C-terminal domain 611 721 IPR001650 -
Ahy20g3296 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 459 IPR027417 -
Ahy20g3296 782 Gene3D - 183 441 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3296 Ahy-Chr20 143325840 143333786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3296 227 760 RAD5 or RAD16-like Gene Family AT5G22750 26.187 7.51e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy20g3296 SNF2_N 2.30E-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3296 K14439 - gmx:100806323 1220.3