Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3294 ATGGCTTCCTCTACCTTCCAACACAACCACCATTCTCCTTCAGCTGTGATCAGTTTCTTCAAGATTGTTCTCACAGAAAGCCTTCAAAATGGAATTCTTAAGGTACCAAACAAGTTTAGTAAGAAATATGGTAATGGTTTTCCGAATCCAGTGTATCTGAAGCCTGCAGATGACACTGAATGGAAAATAGATTGGACTAATAAAGATGGTGAGATTCTGTTCGAAAAGGGTTGGAAAGAGTTTGCTGCGTATTACTCACTTGAAAATGGCCATTTGTTGTGGTTTGAGTACAACGGAACTTCTAAAATTGAAGTACAAATATTTGACATGAGTTGCCTTGAAATAGAGTATCCTTCCAATGACCTCATCAATGATGGTAACTTGGCTGGGATCTTGAATGAACAGCCGCAGCCGAAGAAAAAGGCGAAAGCAGCACCGAAGCCATCATCTCCTTCTAGAAGTAAAAGAGTGAAATTTACTGTCAAAACTATAGATGTGGAAGATAGTGAAGAAGATAGCGAATTGGATAGCCAATCCAAAGAGACACAGCTTAAGAAATTGCCATATGTGGATGATTTCTATCCTGGGACCAGTGGGTTTCAAGCTCTGAATGAAGCACAGAAATTCAAATCAGAAAATCCCTTTTTCATAGTCAAGGCAAGGCAAAGCAATGTATCAAGACCAACAGTTAATTTCCAAGCTTCCTTTTTCAGAAAGTATTTTGAAAAGGAGCAGAATGTACAGATAAGGTTTCAGAAGATACTGATTCCTGCAAAGCTGCGCTGTTATCCATATAATTCTCATGCCATTATCGCTTCCGGTTGGGGACTTTTTGTTCGAACAAGTACACTACAACCTGGGGATGTTACTATTTTTGAGCTCATCGAAAGAGAAGATCCGGTGCTTGATGTTCATATTTATAGAGCCCAAGATTTCCAGCCTCAGGTCTCTGGGATTCAATCTCAGAAAGAAGCTAAGAAGTCCAAATGTCCAAAAGAATTCAAGAACTCCGAGTCACAAAATCCCTCTTTCGTGATCAAGATAACAGAAAGTGATCTATCAAAATCAAGGGCTAGCGTGCCAGTTTCCTTCTTCAACAAGTATTTCGAAAAGAAGGAGCCGTATGTAGTGATACGATTTGATAGCAAGTTGTGGCCTGTAAAGTTGCTGTGTTATCAGGCTAATGCCTATATCTCCCGCGGTTGGCTGGCTTTCGCTCTTGACAATAATTTAAAAGCTGGAGATGTTTGTATCCTTGAGCTTGTCAATGGAAAAGATGCATTGCTCGAATGTCGTATTTATAGAGCAGATGGTTAG 1317 0.3994 MASSTFQHNHHSPSAVISFFKIVLTESLQNGILKVPNKFSKKYGNGFPNPVYLKPADDTEWKIDWTNKDGEILFEKGWKEFAAYYSLENGHLLWFEYNGTSKIEVQIFDMSCLEIEYPSNDLINDGNLAGILNEQPQPKKKAKAAPKPSSPSRSKRVKFTVKTIDVEDSEEDSELDSQSKETQLKKLPYVDDFYPGTSGFQALNEAQKFKSENPFFIVKARQSNVSRPTVNFQASFFRKYFEKEQNVQIRFQKILIPAKLRCYPYNSHAIIASGWGLFVRTSTLQPGDVTIFELIEREDPVLDVHIYRAQDFQPQVSGIQSQKEAKKSKCPKEFKNSESQNPSFVIKITESDLSKSRASVPVSFFNKYFEKKEPYVVIRFDSKLWPVKLLCYQANAYISRGWLAFALDNNLKAGDVCILELVNGKDALLECRIYRADG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3294 438 ProSiteProfiles B3 DNA-binding domain profile. 271 310 IPR003340 GO:0003677
Ahy20g3294 438 PANTHER B3 DOMAIN-CONTAINING 324 436 - -
Ahy20g3294 438 ProSiteProfiles B3 DNA-binding domain profile. 343 437 IPR003340 GO:0003677
Ahy20g3294 438 Gene3D - 13 112 IPR015300 -
Ahy20g3294 438 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
Ahy20g3294 438 SUPERFAMILY DNA-binding pseudobarrel domain 16 118 IPR015300 -
Ahy20g3294 438 SUPERFAMILY DNA-binding pseudobarrel domain 337 435 IPR015300 -
Ahy20g3294 438 CDD B3_DNA 342 435 IPR003340 GO:0003677
Ahy20g3294 438 Gene3D - 199 313 IPR015300 -
Ahy20g3294 438 Gene3D - 321 437 IPR015300 -
Ahy20g3294 438 SMART B3_2 19 111 IPR003340 GO:0003677
Ahy20g3294 438 SMART B3_2 344 437 IPR003340 GO:0003677
Ahy20g3294 438 SMART B3_2 215 310 IPR003340 GO:0003677
Ahy20g3294 438 CDD B3_DNA 19 109 IPR003340 GO:0003677
Ahy20g3294 438 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 309 - -
Ahy20g3294 438 MobiDBLite consensus disorder prediction 133 156 - -
Ahy20g3294 438 Pfam B3 DNA binding domain 346 436 IPR003340 GO:0003677
Ahy20g3294 438 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Ahy20g3294 438 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Ahy20g3294 438 PANTHER B3 DOMAIN-CONTAINING 15 309 - -
Ahy20g3294 438 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 324 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3294 Ahy-Chr20 143302833 143308967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3294 335 437 B3 DNA Binding Superfamily AT3G18990 32.692 3.23e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3294 B3 3.50E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3294 - - adu:107471605 783.867