Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3293 ATGGCTTCAACTAGCTTCCAACCAAAGAGCAAGTCTCCTTCCACTGTGATCAGCTTCTTCAAGATTATTCACAGGAAAAGTCTCCAAGCTGGAACTCTTATACCAAGAAAGTTCAGTAGGATATATGGTAGTAGTGTGCCGAATCCAGTGTATCTTAAGCTTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATCATGATGGTGAGATTATATTTAAAAATGGTTGGAAAGAGTTTGCTGCATATTACTCTCTAGATCAAGGGCACTTGTTGTGGTTTGACTATAAAAAAACTTCTCTTTTTGAGGTACACATATTTGACACGAGTTGCCTTGAAATAAACTATCCTCCCAATGATCACACTGATGATGATTGTGTTGAGATTTTAAATAAGCCCCCATCACCACTCCGGGGGGATCTAAGGAAGCGGTCGGTAGCACCATTATCGACTCCTTCTAAAACGAAACGATTGAGAAGTGCTACAAAATCTAGAGATGTTGAAAGAGGTAGCCAATCTAAGGATACAAGCCTTGAAATGCCAGTATTTTCATCTCCCCGGCAAGATTTCCTTGATTTCTCTCCTGGGACCAGTGGGTTTCAGGCTCTGAAAGAAGCTGAGAAGTTCAGCTCTGAAAATCCCTTTTGCATTGTCAAGATAAGGCAAGCTATACGTTCAAACCGTAATTTTCCAGCTTCCTTTTTCATAAAATACTTTAAAAATGAGGAGCAGAAAGTAAAGATAAGCTTTGAGGGGAAGTTGTTTCCTGCAAAGTTGCGCTATTATCGACAAAATTCTACTGCCTTTATCTCTTCTGGATGGCTCCAATTTGCTCAAGCAAGTAAATTACAACCTGGGGATGTTACTGTGTTTGAGCTCGTCGATAGAGATGATCCGGTGTTTGAAACTCATATTTATAGAGCCAAAGCTTTCAAGTCTTCGTCCTGTGGCTTTCAATCTCTGAAAGCAGCTCGGAATTTCAAGTCAGAAAATCCCTCTTTCATGGTCAAGATCACACAAACAAACCTACCAAGAACAAATGCTGCCATACCAGTTCCCTTCTTCACAAAGTATTTTGCAAAGAAGAAGCCGAATATACAGATAAAGTTGAGAAACAAGTTGTTGCCAGCAAAGTTGCTCTATTATCCATCATCTTCTGCTGCCTATATCTCTGCCGGTTGGCAAGCTTTTGTTGGTGCCAGTAATTTAAAGGCTGGAGATGTTTGTGTCTTTGAGCTTGTCAATGAAAAAGATCGAGTGCTCGATGTTCATATTTATAGAGCCGGTCGTTTGTTAAGCTTTTAG 1305 0.4023 MASTSFQPKSKSPSTVISFFKIIHRKSLQAGTLIPRKFSRIYGSSVPNPVYLKLPDGTQWKIDWTNHDGEIIFKNGWKEFAAYYSLDQGHLLWFDYKKTSLFEVHIFDTSCLEINYPPNDHTDDDCVEILNKPPSPLRGDLRKRSVAPLSTPSKTKRLRSATKSRDVERGSQSKDTSLEMPVFSSPRQDFLDFSPGTSGFQALKEAEKFSSENPFCIVKIRQAIRSNRNFPASFFIKYFKNEEQKVKISFEGKLFPAKLRYYRQNSTAFISSGWLQFAQASKLQPGDVTVFELVDRDDPVFETHIYRAKAFKSSSCGFQSLKAARNFKSENPSFMVKITQTNLPRTNAAIPVPFFTKYFAKKKPNIQIKLRNKLLPAKLLYYPSSSAAYISAGWQAFVGASNLKAGDVCVFELVNEKDRVLDVHIYRAGRLLSF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3293 434 MobiDBLite consensus disorder prediction 133 179 - -
Ahy20g3293 434 CDD B3_DNA 12 108 IPR003340 GO:0003677
Ahy20g3293 434 CDD B3_DNA 332 427 IPR003340 GO:0003677
Ahy20g3293 434 CDD B3_DNA 230 307 IPR003340 GO:0003677
Ahy20g3293 434 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 319 428 - -
Ahy20g3293 434 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 308 - -
Ahy20g3293 434 SUPERFAMILY DNA-binding pseudobarrel domain 209 309 IPR015300 -
Ahy20g3293 434 PANTHER B3 DOMAIN-CONTAINING 12 308 - -
Ahy20g3293 434 Gene3D - 12 111 IPR015300 -
Ahy20g3293 434 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Ahy20g3293 434 Gene3D - 318 429 IPR015300 -
Ahy20g3293 434 Gene3D - 198 311 IPR015300 -
Ahy20g3293 434 MobiDBLite consensus disorder prediction 159 173 - -
Ahy20g3293 434 PANTHER B3 DOMAIN-CONTAINING 319 428 - -
Ahy20g3293 434 SUPERFAMILY DNA-binding pseudobarrel domain 13 110 IPR015300 -
Ahy20g3293 434 Pfam B3 DNA binding domain 28 109 IPR003340 GO:0003677
Ahy20g3293 434 Pfam B3 DNA binding domain 337 428 IPR003340 GO:0003677
Ahy20g3293 434 Pfam B3 DNA binding domain 228 308 IPR003340 GO:0003677
Ahy20g3293 434 SUPERFAMILY DNA-binding pseudobarrel domain 327 428 IPR015300 -
Ahy20g3293 434 ProSiteProfiles B3 DNA-binding domain profile. 333 429 IPR003340 GO:0003677
Ahy20g3293 434 ProSiteProfiles B3 DNA-binding domain profile. 251 309 IPR003340 GO:0003677
Ahy20g3293 434 SMART B3_2 334 429 IPR003340 GO:0003677
Ahy20g3293 434 SMART B3_2 215 309 IPR003340 GO:0003677
Ahy20g3293 434 SMART B3_2 20 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3293 Ahy-Chr20 143298070 143300672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3293 297 432 B3 DNA Binding Superfamily AT3G18990 31.915 1.51e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3293 B3 3.30E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3293 - - adu:107471605 421.009