Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3292 ATGCAAAATCAGAAGAAAAGTTTTCCAAAATGGATTGTTAAATGCTGCTTCTTGTGTCCGTGCATTTATTTGATCAAGAGATTAGAGAAATTCAGTTTATTAATATCAACTAACCAACAAAAGATAAAAGCTGCATCAACAGCTTCAACTTACACCGGGCCCACTAAAGACAAATGTCAGTGTCCACTTAAAAAGTGTAGCAGACACAATAATTCTTACTTGTGTCAAAAAATAACCATGGCTTCATGTAGCTACCAACCAAACAAGCATTCTCCTCCAAAAACTTTGATCCGTTTCTTTAAGATTATTCTCAGACAAAGCCTTCAAGATGGAAATCTTAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGGTGTGAAAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAGTACAATGGACTCAGCATGATGGTGACATTTTATTTGAAAAGGGTTGGAAAGAATTTGCTGCATATTACTCTCTGGATCATGGTCACTTGTTGCGATTTGAGTTCAATGGAACTTCTTGTTTTGAGGTACACATATTTGACATGAGTGGCCTTGAAATACACTATCCTTTCAATAACCGGATCGACAATGATTCGGTTGAGACTTTGAATGAGCTACCACCACAATGTTGGGGAAGAGAGCAGAAAAGATTGAAAACACCATTATCATTATCATTGCCTTTTACAAGTAAGCAATTGAGAATTGCCACAGAAACTAGAGATGTGGAAGGAGGTAGTCAACCTGAAGAGAAAAACATTGAGATGCCAATAATTCCATCTGTCATTCATCGTTCGGATGTTTTTGAGCCTGGGACCTGTGGTTTTCGATGCCTGGAAGAAGCTCAGAAGTTCAACTCAGAAAATCCCTCTTTCATGATCAAGCTAGGGAAGAGTAATCTACAGAGATCAAGGGCTAATTTTAAAGCTTCCTTCTACATAAAGTATTTTGAAAACAAGGAGCAGAATGTAGAGATACGGTACGAAGGCAAGCTGTGGCCTGCAAAGTTGCTCTGTTATCCCGCAGCAGCAGCTGCCTATATCTCGAATGGTTGGCGGCCTTTTAGTCTTGAGAATGATTTAAAAGTTGGAGATGTTTGTGTCTTTGAGCTCATCAGTGGAGAAAACCCAGTGCTTGATGCTCATATTTATAGAGCCAATGGTTAA 1188 0.3897 MQNQKKSFPKWIVKCCFLCPCIYLIKRLEKFSLLISTNQQKIKAASTASTYTGPTKDKCQCPLKKCSRHNNSYLCQKITMASCSYQPNKHSPPKTLIRFFKIILRQSLQDGNLKIPNKFTSKYGGGVKNPVYLKPPDGTQWKVQWTQHDGDILFEKGWKEFAAYYSLDHGHLLRFEFNGTSCFEVHIFDMSGLEIHYPFNNRIDNDSVETLNELPPQCWGREQKRLKTPLSLSLPFTSKQLRIATETRDVEGGSQPEEKNIEMPIIPSVIHRSDVFEPGTCGFRCLEEAQKFNSENPSFMIKLGKSNLQRSRANFKASFYIKYFENKEQNVEIRYEGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELISGENPVLDAHIYRANG* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3292 395 Pfam B3 DNA binding domain 99 189 IPR003340 GO:0003677
Ahy20g3292 395 Pfam B3 DNA binding domain 307 392 IPR003340 GO:0003677
Ahy20g3292 395 PANTHER B3 DOMAIN-CONTAINING 96 393 - -
Ahy20g3292 395 Gene3D - 283 394 IPR015300 -
Ahy20g3292 395 SUPERFAMILY DNA-binding pseudobarrel domain 292 394 IPR015300 -
Ahy20g3292 395 SUPERFAMILY DNA-binding pseudobarrel domain 97 191 IPR015300 -
Ahy20g3292 395 ProSiteProfiles B3 DNA-binding domain profile. 98 191 IPR003340 GO:0003677
Ahy20g3292 395 CDD B3_DNA 297 392 IPR003340 GO:0003677
Ahy20g3292 395 ProSiteProfiles B3 DNA-binding domain profile. 336 394 IPR003340 GO:0003677
Ahy20g3292 395 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 96 393 - -
Ahy20g3292 395 CDD B3_DNA 98 189 IPR003340 GO:0003677
Ahy20g3292 395 SMART B3_2 299 394 IPR003340 GO:0003677
Ahy20g3292 395 SMART B3_2 99 191 IPR003340 GO:0003677
Ahy20g3292 395 Gene3D - 94 192 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3292 Ahy-Chr20 143295364 143298151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3292 99 394 B3 DNA Binding Superfamily AT3G18990 29.080 4.56e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3292 B3 1.30E-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3292 - - ahf:112717097 735.717