Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3278 ATGGTTACCGTAATCAGGGATGACAGCGGTTCAGTAAAAGGTGGAACTGCAAGAAAAATCAGGGCAAGCTCAGCTCACACGATAACAAATCTAATGAAGACAGGGAATCTTCAGTTAAGCTGGAGCACGAATCCGCCTTACCAGAAGATACCAAACAAGTTCACTAGCAAATATGGTGGTGGTGTGAAAAATCCAGTGTACCTGAAGCCTCCAGATGGCACTCAATGGAAAGTACGTCGGACTCAGCATGATTATCAGATTTTATTTGAAAAGGGTTGGAAAGAGTTTGCTGCTTATTACTCTCTTGATCATGGCCACTTGTTGCAGTTTGAGTACAATGGAACTTCTTGTTTTGAGAGGCTCTCCAGGGGATTAAACATCAGATGA 387 0.4289 MVTVIRDDSGSVKGGTARKIRASSAHTITNLMKTGNLQLSWSTNPPYQKIPNKFTSKYGGGVKNPVYLKPPDGTQWKVRRTQHDYQILFEKGWKEFAAYYSLDHGHLLQFEYNGTSCFERLSRGLNIR* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3278 128 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 44 119 - -
Ahy20g3278 128 Gene3D - 25 121 IPR015300 -
Ahy20g3278 128 PANTHER B3 DOMAIN-CONTAINING 44 119 - -
Ahy20g3278 128 SMART B3_2 39 126 IPR003340 GO:0003677
Ahy20g3278 128 ProSiteProfiles B3 DNA-binding domain profile. 50 126 IPR003340 GO:0003677
Ahy20g3278 128 CDD B3_DNA 50 117 IPR003340 GO:0003677
Ahy20g3278 128 Pfam B3 DNA binding domain 49 119 IPR003340 GO:0003677
Ahy20g3278 128 SUPERFAMILY DNA-binding pseudobarrel domain 46 118 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3278 Ahy-Chr20 143223845 143227652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3278 49 118 B3 DNA Binding Superfamily AT3G18990 41.429 9.43e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3278 B3 1.90E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3278 - - aip:110268510 269.24