Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3271 ATGGCTTCCTCTAGCCGTCAACAAAACAAGCATTCTCCTTCTACTTCTACTGAGACCAGTTTCTTTAAGATTATTCTCAGAAAAGCTCTTCAAGATGGAAACTTTAAGTTGACAAAAAAGTTCACTAGACAATATGGTTCTGTCTTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAAAGTCTATTGGACTAATCATGATGGTGTAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTATTATACTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACGCATACATGACATGAGTTGCCACCAAATAGAGTATCCTGCCAATGATCATATCAAAGAGCAGTTGCCACGCAGGGACCAGCAGCCGGTGAAAAGGCCAAAAGAATCAAAAACTAGAGATGTGGATAGCAGTCCCAACACCCAAAACATGAGACTTAATGAGGAACAGCAGAAGAAAAGATTGAATGAACCACTGCCAGGAGGAGTCCGGGGCCAACCGGAGAAAAAAATGAGAGCACTAGTGTCTTCTGCTTCTAAAAGTAGACAGTTGGAAAATGACACACAAATTAGGGATGGTGAAAGAAGCCTCAGTTCACACGGTATTAAATCCAAAGAGAAAAACCATGAGGTGCCAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTTCTGTTAGGCTCTGTCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGCGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTTTGATGTTCACATTTGTCGTCGACAACGCCGCGAATCACTTTCCAAACCAGTGACTCGTGTGATTCAGCTCCCGAAAGAAGCTAAGGAGCTCAACTCACAAAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTTTACAGAAAGTATTTTAAAAAGAATCAACAGGATGTAAAATTACAGTTCGAAAAGGAGTTGTGGCCTGCTACGATTATCTACAATCCGTCATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCTTTTGCCAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTGTTTGATGTTCATATCTGTAGAGCCCAGTGCTAG 1473 0.3944 MASSSRQQNKHSPSTSTETSFFKIILRKALQDGNFKLTKKFTRQYGSVLSNPLYLKPPDGTEWKVYWTNHDGVILFKKGWKEFVAYYSLDHGHLLYFEYNIGTSHIEVRIHDMSCHQIEYPANDHIKEQLPRRDQQPVKRPKESKTRDVDSSPNTQNMRLNEEQQKKRLNEPLPGGVRGQPEKKMRALVSSASKSRQLENDTQIRDGERSLSSHGIKSKEKNHEVPVSVNQDSNGKRNRRRKDSESSVRLCPARPESLKEAKKFKREKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDVCLFKLINRKDPVFDVHICRRQRRESLSKPVTRVIQLPKEAKELNSQNPSFMVKIKDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFEKELWPATIIYNPSSKNSFISAGWSSFARASKLEAGDVCVFELINKKDLFDVHICRAQC* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3271 490 SUPERFAMILY DNA-binding pseudobarrel domain 388 488 IPR015300 -
Ahy20g3271 490 SMART B3_2 271 366 IPR003340 GO:0003677
Ahy20g3271 490 SMART B3_2 21 114 IPR003340 GO:0003677
Ahy20g3271 490 SMART B3_2 395 489 IPR003340 GO:0003677
Ahy20g3271 490 MobiDBLite consensus disorder prediction 122 149 - -
Ahy20g3271 490 MobiDBLite consensus disorder prediction 199 226 - -
Ahy20g3271 490 Gene3D - 13 115 IPR015300 -
Ahy20g3271 490 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 375 488 - -
Ahy20g3271 490 CDD B3_DNA 269 364 IPR003340 GO:0003677
Ahy20g3271 490 ProSiteProfiles B3 DNA-binding domain profile. 436 489 IPR003340 GO:0003677
Ahy20g3271 490 SUPERFAMILY DNA-binding pseudobarrel domain 19 121 IPR015300 -
Ahy20g3271 490 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Ahy20g3271 490 ProSiteProfiles B3 DNA-binding domain profile. 312 366 IPR003340 GO:0003677
Ahy20g3271 490 PANTHER B3 DOMAIN-CONTAINING 14 364 - -
Ahy20g3271 490 Pfam B3 DNA binding domain 408 488 IPR003340 GO:0003677
Ahy20g3271 490 Pfam B3 DNA binding domain 282 366 IPR003340 GO:0003677
Ahy20g3271 490 Pfam B3 DNA binding domain 28 110 IPR003340 GO:0003677
Ahy20g3271 490 MobiDBLite consensus disorder prediction 234 252 - -
Ahy20g3271 490 CDD B3_DNA 393 487 IPR003340 GO:0003677
Ahy20g3271 490 Gene3D - 380 489 IPR015300 -
Ahy20g3271 490 Gene3D - 253 367 IPR015300 -
Ahy20g3271 490 PANTHER B3 DOMAIN-CONTAINING 375 488 - -
Ahy20g3271 490 MobiDBLite consensus disorder prediction 122 252 - -
Ahy20g3271 490 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 364 - -
Ahy20g3271 490 CDD B3_DNA 20 112 IPR003340 GO:0003677
Ahy20g3271 490 SUPERFAMILY DNA-binding pseudobarrel domain 265 365 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3271 Ahy-Chr20 143161071 143164486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3271 385 480 B3 DNA Binding Superfamily AT3G18990 31.959 9.21e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3271 B3 2.10E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3271 - - adu:107471893 887.871