Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3270 ATGGCTTCCTCTGTGATCCGTTTCTTCAAAATTGTTCTCAGACATAGCCTTGAAGATGGAAAGCTTATGATACCAATAACGTTCAGTATGAAATATGGTCGCGGTGTTCCAAATCCAGTGTATCTGAAGCTTCCAGATGGCACTGCATGGAAGATGGATTGGTCTGAGTCTGATGGTGCGATTCAATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATTTGCTGTGGTTTGAGTACAATCAAACTTCTAACATTGAAGTACACATTTTTGACAAGACTTGCCTTGAAATAGACTATCCTTCCGTGGATCACATCAGCGATGATGATTCGATTGAGATCTTGAATGAACTGCCGCCACGAGGCTGGCCGAGGAAAACAAAGAAAGCAGCACGAAAGACACCATCTCCTTCCACAAGTAAAATGTTCACAAGTTCTGCCAACACTAAAGTAGTGAAATGCTGCCCTGAAAGAAACTATCCTTCCAAGGACCACATTGGTGATGACAACATGGTTAAGGTTGAGAATGAACCGCCGCGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCAGCAAACACAGCATCTCCTTCTACAAGCAAAATGTTCACAAGTTCTGCCAAGACTAGAGCAGTGAAACGGTGCCCTGAAACAGACTATCCTTCAAGAAGAGGCCGAGGCCGACCGAGAAAAACAGAGAAAGCTGCACCAAAGACACCATCTGCTTGTACAAGTAAAATGTTCACAAGTTCTGCCAAAACTAGGTGCCCTGAAATAGACTATCCTTCCAAGGACCACATTGATGATGCCAACATGGTTAAGGTTGAGAATGAACTGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAAAATTGAAAGCAGCAGTAGAAGTATCATCTCCTTCTACAAGTAATACATTGCGGAGTTCTGTCAAAACTGGAGATGTAGAGAAGGGCCCTGATAAACAAAACTGGATGCAGTGTTGCAAAATTGAAGAAGCTAGTCAATCTGAAGAGACAGGTCTTAAGATGCCAACAATTTAA 1065 0.4385 MASSVIRFFKIVLRHSLEDGKLMIPITFSMKYGRGVPNPVYLKLPDGTAWKMDWSESDGAIQFENGWKEFASYYSLDHGHLLWFEYNQTSNIEVHIFDKTCLEIDYPSVDHISDDDSIEILNELPPRGWPRKTKKAARKTPSPSTSKMFTSSANTKVVKCCPERNYPSKDHIGDDNMVKVENEPPRRGRGRPRKTEKAAANTASPSTSKMFTSSAKTRAVKRCPETDYPSRRGRGRPRKTEKAAPKTPSACTSKMFTSSAKTRCPEIDYPSKDHIDDANMVKVENELPRRGRGRPRKKLKAAVEVSSPSTSNTLRSSVKTGDVEKGPDKQNWMQCCKIEEASQSEETGLKMPTI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3270 354 SMART AT_hook_2 186 198 IPR017956 GO:0003677
Ahy20g3270 354 SMART AT_hook_2 231 243 IPR017956 GO:0003677
Ahy20g3270 354 SMART AT_hook_2 289 301 IPR017956 GO:0003677
Ahy20g3270 354 PRINTS AT-hook-like domain signature 186 196 IPR017956 GO:0003677
Ahy20g3270 354 PRINTS AT-hook-like domain signature 287 297 IPR017956 GO:0003677
Ahy20g3270 354 PRINTS AT-hook-like domain signature 229 240 IPR017956 GO:0003677
Ahy20g3270 354 SMART B3_2 8 100 IPR003340 GO:0003677
Ahy20g3270 354 PANTHER B3 DOMAIN-CONTAINING 4 203 - -
Ahy20g3270 354 PRINTS High mobility group protein (HMGY) signature 229 241 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ahy20g3270 354 PRINTS High mobility group protein (HMGY) signature 278 297 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Ahy20g3270 354 MobiDBLite consensus disorder prediction 246 260 - -
Ahy20g3270 354 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 203 - -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 123 151 - -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 304 319 - -
Ahy20g3270 354 Pfam B3 DNA binding domain 8 99 IPR003340 GO:0003677
Ahy20g3270 354 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Ahy20g3270 354 SUPERFAMILY DNA-binding pseudobarrel domain 3 100 IPR015300 -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 199 215 - -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 220 234 - -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 164 196 - -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 285 331 - -
Ahy20g3270 354 CDD B3_DNA 7 98 IPR003340 GO:0003677
Ahy20g3270 354 Gene3D - 3 101 IPR015300 -
Ahy20g3270 354 MobiDBLite consensus disorder prediction 164 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3270 Ahy-Chr20 143159100 143160717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3270 3 120 B3 DNA Binding Superfamily AT4G01580 38.017 2.74e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3270 B3 1.20E-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3270 - - ahf:112717083 575.474