Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3268 ATGGCTTCTTCTAGCTCTCAACAAAACAAGCAGTCTCCTTCTACTTCTACTGTGATTTCTTTCTTTAAGATTATTCTCAAACAAGCTCTTCAAGATGATGACTTTAAGTTACCAATAAAGTTCACTGAAAAACATGGTTCTGGCCTATCAAATCCATTGTATCTTAAGCCTCCGGATGGTACTGAATGGAGAGTAGATTGGACTAATCAGGATGGTGAAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGATTATAATATTGGAACTTCTCACATGGAAGTACACATATTTGACATGGGTTGCCTCCAAATAGAGTATCCTGACAATGATCAGATCAAAGAGCAGCTGCCACGCAGAGATCAGCAGTCAGTGAAAAGGCCAGAAGAACAAAAAACTAGACATGTGGATAGCAGTCCCAGCACCCAAAACATGAGACTTAACGAGGGACCGCAGAAGAAAAGATTGAATGAATTGCCAAGAGAAGTCCGGGGCCAACCGACTAAAAAACTGAGAGCACTAGTGTCATCTGCTTCTAAAAGTAGACAATTGGAAAATGACACACAAATCAGGGATGTTGAAAGAAGCCTCAATTCACACGGTATTAAATCCAAAGAGAAAAACCGTGAGATGCTAGTGTCTGTCAATCAAGATTATAATGGCAAACGGAATAGAAGAAGAAAAGATTCTGAATCTTCTATTAGGCCCTGTCCTGCAAGACCTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTCAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTTCCAAACCAGTGACTCATGTGATTCAGCTCCCAAAAGAAGTTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTCAAGATAAGAGACAGTGATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTTTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAATTACAGTTCGGAAAGGAGTCGTGGCCTGCTACGATAATCTACAATCCGACATCGAAAAACAGCTTTATTTCGGCTGGTTGGAGCTCATTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGTTCATCAATGAAAAAGATCTGTTTGATGTTCATATTTGTAGAGCCCAATGCTAG 1470 0.3918 MASSSSQQNKQSPSTSTVISFFKIILKQALQDDDFKLPIKFTEKHGSGLSNPLYLKPPDGTEWRVDWTNQDGEILFKKGWKEFVAYYSLDHGHLLWFDYNIGTSHMEVHIFDMGCLQIEYPDNDQIKEQLPRRDQQSVKRPEEQKTRHVDSSPSTQNMRLNEGPQKKRLNELPREVRGQPTKKLRALVSSASKSRQLENDTQIRDVERSLNSHGIKSKEKNREMLVSVNQDYNGKRNRRRKDSESSIRPCPARPESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASQLQAGDVCLFKLINRKDPVFDVHICRRQRRESLSKPVTHVIQLPKEVKELNSQNPSFMVKIRDSDPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARASKLEAGDVCVFEFINEKDLFDVHICRAQC* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3268 489 MobiDBLite consensus disorder prediction 130 253 - -
Ahy20g3268 489 CDD B3_DNA 268 363 IPR003340 GO:0003677
Ahy20g3268 489 Pfam B3 DNA binding domain 409 487 IPR003340 GO:0003677
Ahy20g3268 489 Pfam B3 DNA binding domain 23 112 IPR003340 GO:0003677
Ahy20g3268 489 Pfam B3 DNA binding domain 281 365 IPR003340 GO:0003677
Ahy20g3268 489 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 363 - -
Ahy20g3268 489 SUPERFAMILY DNA-binding pseudobarrel domain 264 364 IPR015300 -
Ahy20g3268 489 CDD B3_DNA 392 486 IPR003340 GO:0003677
Ahy20g3268 489 ProSiteProfiles B3 DNA-binding domain profile. 393 488 IPR003340 GO:0003677
Ahy20g3268 489 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 376 487 - -
Ahy20g3268 489 Gene3D - 14 115 IPR015300 -
Ahy20g3268 489 MobiDBLite consensus disorder prediction 233 253 - -
Ahy20g3268 489 ProSiteProfiles B3 DNA-binding domain profile. 311 365 IPR003340 GO:0003677
Ahy20g3268 489 MobiDBLite consensus disorder prediction 164 181 - -
Ahy20g3268 489 SUPERFAMILY DNA-binding pseudobarrel domain 387 487 IPR015300 -
Ahy20g3268 489 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Ahy20g3268 489 SMART B3_2 270 365 IPR003340 GO:0003677
Ahy20g3268 489 SMART B3_2 394 488 IPR003340 GO:0003677
Ahy20g3268 489 SMART B3_2 21 114 IPR003340 GO:0003677
Ahy20g3268 489 MobiDBLite consensus disorder prediction 130 149 - -
Ahy20g3268 489 Gene3D - 379 488 IPR015300 -
Ahy20g3268 489 Gene3D - 252 366 IPR015300 -
Ahy20g3268 489 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Ahy20g3268 489 PANTHER B3 DOMAIN-CONTAINING 14 363 - -
Ahy20g3268 489 MobiDBLite consensus disorder prediction 198 225 - -
Ahy20g3268 489 CDD B3_DNA 20 112 IPR003340 GO:0003677
Ahy20g3268 489 PANTHER B3 DOMAIN-CONTAINING 376 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3268 Ahy-Chr20 143135297 143138729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3268 384 479 B3 DNA Binding Superfamily AT3G18990 30.928 2.16e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3268 B3 2.50E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3268 - - adu:107471893 826.624