Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3266 ATGGCATTGCAGAAAATACCAAACAAGTTCAGTAGAAAATATGGTGGTGATATGCCAAATCCAGTGCAACTCCAGCCTCCAGATGGCACTGAATGGAGAATAGATTGGACTAATCATGATGGTGAGATTCTGTTTGAAAACGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGAGAATGGTCATGTGTTGTGGTTTGAGTACAATGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGCCCTCGAAATTGATTATCCTTCCAATGGCCGAATCGGTGATGACAACTCGGTTGAGATTTTGGATGAACCGCCGGCACGAAGGGGCCGAGGCCGGCCGAAGAAAAATGTGATAGCAGAACCAAAGCAATCACGTGCTTCTACTTCTACAAGCAAAATAATGAAAAGTGCCATCAAAACTAAAGATATAGATAAAAATCCCAATACAAAAAAATTGAAGCAGCATGTCGAGAATGAAAAAGATGGTCAATCTGAAGAGTCAGCAGATCTTAAGCTTCCAATAATTCAACGTGCCAGACCAGATATGGATGAAGTTATTAGAGAAGCAAAGAAGTTCAAGTCGAAAAATCCTTCTTTTGTCATAAAGATTAAGCAAATGCACCAAACAGGATCACCAGCAAATCTTCCAGTTTGTTTCTTCAGGATGTACTTCGAGAACAGGAAGCAGTGGCATGCAACATTGATCTATTATCCAAATAGGAAGAATGCCCTGATCTCTAATTGGCGCTTGTTCCTTGAAGAAAATAACTTAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGGTCCAGATCTTAAGGTTCATATTCGTCGTAGCCATGATTAG 861 0.3972 MALQKIPNKFSRKYGGDMPNPVQLQPPDGTEWRIDWTNHDGEILFENGWKEFATFYTLENGHVLWFEYNGTSNIKVNIFDMSALEIDYPSNGRIGDDNSVEILDEPPARRGRGRPKKNVIAEPKQSRASTSTSKIMKSAIKTKDIDKNPNTKKLKQHVENEKDGQSEESADLKLPIIQRARPDMDEVIREAKKFKSKNPSFVIKIKQMHQTGSPANLPVCFFRMYFENRKQWHATLIYYPNRKNALISNWRLFLEENNLKAGDVCIFELINRQGPDLKVHIRRSHD* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3266 286 ProSiteProfiles B3 DNA-binding domain profile. 230 285 IPR003340 GO:0003677
Ahy20g3266 286 MobiDBLite consensus disorder prediction 139 169 - -
Ahy20g3266 286 CDD B3_DNA 194 283 IPR003340 GO:0003677
Ahy20g3266 286 Gene3D - 181 286 IPR015300 -
Ahy20g3266 286 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 284 - -
Ahy20g3266 286 SUPERFAMILY DNA-binding pseudobarrel domain 5 89 IPR015300 -
Ahy20g3266 286 PANTHER B3 DOMAIN-CONTAINING 5 284 - -
Ahy20g3266 286 SUPERFAMILY DNA-binding pseudobarrel domain 194 284 IPR015300 -
Ahy20g3266 286 MobiDBLite consensus disorder prediction 98 121 - -
Ahy20g3266 286 Pfam B3 DNA binding domain 227 284 IPR003340 GO:0003677
Ahy20g3266 286 Pfam B3 DNA binding domain 5 80 IPR003340 GO:0003677
Ahy20g3266 286 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Ahy20g3266 286 SMART B3_2 2 82 IPR003340 GO:0003677
Ahy20g3266 286 SMART B3_2 201 285 IPR003340 GO:0003677
Ahy20g3266 286 CDD B3_DNA 6 80 IPR003340 GO:0003677
Ahy20g3266 286 MobiDBLite consensus disorder prediction 97 169 - -
Ahy20g3266 286 Gene3D - 2 83 IPR015300 -
Ahy20g3266 286 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3266 Ahy-Chr20 143130461 143131831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3266 5 286 B3 DNA Binding Superfamily AT3G18990 26.687 1.85e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3266 B3 4.80E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3266 - - ahf:112784504 549.28