Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3263 ATGATGACTTTAAGTACTGAAAAATATGGTTCTGGCCTATCAAACCCATTGTATCTTAAGCCTCCGGATGGTACTGAATGGAGAGTAGAGTGGATTAATCATGATGGTGGGATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTAATCATGGCCATTTGTTATGGTTTGAGTATAATATTGGAACTTCTCACATGGAAGTATACATATTTGCCAATGATCAGATCAAAGAGCAGCTGCCACGCAGTAGTCAGCAGCCGGTGAAAAGGCCAGAAGAACAAAAAACTAGAGATGTGGATAGTAGTCCCAACACCCAAAACATGAGACTTAACGAGGGACTGCTGAAGAAAAGATTGAATGAACCATTTCCAAGAGAAGTCCAGGGACAACCGAAGAAAAAACTGAGAGCACTAGTGTCATCTGCTTCTAAAGATAGATAG 453 0.3974 MMTLSTEKYGSGLSNPLYLKPPDGTEWRVEWINHDGGILFKKGWKEFVAYYSLNHGHLLWFEYNIGTSHMEVYIFANDQIKEQLPRSSQQPVKRPEEQKTRDVDSSPNTQNMRLNEGLLKKRLNEPFPREVQGQPKKKLRALVSSASKDR* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3263 150 SUPERFAMILY DNA-binding pseudobarrel domain 7 76 IPR015300 -
Ahy20g3263 150 CDD B3_DNA 13 75 IPR003340 GO:0003677
Ahy20g3263 150 Pfam B3 DNA binding domain 13 76 IPR003340 GO:0003677
Ahy20g3263 150 PANTHER B3 DOMAIN-CONTAINING 7 115 - -
Ahy20g3263 150 MobiDBLite consensus disorder prediction 118 150 - -
Ahy20g3263 150 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 115 - -
Ahy20g3263 150 MobiDBLite consensus disorder prediction 84 150 - -
Ahy20g3263 150 Gene3D - 3 79 IPR015300 -
Ahy20g3263 150 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3263 Ahy-Chr20 143078383 143080078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3263 6 75 B3 DNA Binding Superfamily AT3G18990 44.286 1.13e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3263 B3 2.10E-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3263 - - aip:107622452 314.694