Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3261 ATGGCTTCCTCTAGCTTCCAAAAAAACAAGCATTCTCTGTTCACTGTGATCCGTTTCTTCAAGATTATTCTCAGAAAAAGCCTTGATGATGGATATCTTAAAATACCAACCAAGTTCAGTAGGAAGCATGGCAATAATATGCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTCAATGGAAAATAGATTGGACTAATAATGGTGATGAGATTCTGTTTCAAAAGGGTTGGAAAGAGTTTGCTACATTTTACACTTTGGATAATGGTCATTTGTTGTGGTTTAAGTACAATGGAACTTCTAACATCAAAGTAAACATATTCGACATGAGTGGCCTCGAAATTGAGTATACTTCCAATGGCCGAATCGGTGATGATAACTTGGTTGAGACTTTGGAGGCACCGCCGCCACGAAGGGGCCGAGGCCGGCCGAAGAAGAAAGTGATAGCAGAACCAAAGCAATCATGTCCTTCTACAAGTAAAAAAATGAAAAGAGCCATCAAAACTAAAGACATGGATAAAAGCCCCAATACACAAAACTTGAAGCAGCATGTCAAGTTCAAGATTGAAGAAGATGGTCAATCTGAAGAGACAACAGATATTAAGCAGCCAATAGTTCAATGTGCCAGACCAGATATAGATGTTATTAGAGAAGCAAGGAAGTTCAAGTCGAAAAATCCTTCTTTCGTGATAAAGATTAGGCAAAAGCACCAAGCAGGATCACCAGCAAGTCTTCCAGTTTGCTTCTTCAGAATGTACTTCGAGAACACGAAGCAGTATGCAACTCTACATGTTGGAAAGAAGCAGTGGCATGCAACATTGATCTATTATCCATATAAGAAGAGTGCCATTATCTCTAATTGGCGCTTGTTCGTTAAAGAAAATAACATAAAAGCCGGAGATGTTTGTATCTTTGAGCTCATTAACAGACAAGATCCAGAGCTTAAGGTTCATATTTGTCGAAGCCATGATTAG 975 0.3938 MASSSFQKNKHSLFTVIRFFKIILRKSLDDGYLKIPTKFSRKHGNNMPNPVYLKPPDGTQWKIDWTNNGDEILFQKGWKEFATFYTLDNGHLLWFKYNGTSNIKVNIFDMSGLEIEYTSNGRIGDDNLVETLEAPPPRRGRGRPKKKVIAEPKQSCPSTSKKMKRAIKTKDMDKSPNTQNLKQHVKFKIEEDGQSEETTDIKQPIVQCARPDIDVIREARKFKSKNPSFVIKIRQKHQAGSPASLPVCFFRMYFENTKQYATLHVGKKQWHATLIYYPYKKSAIISNWRLFVKENNIKAGDVCIFELINRQDPELKVHICRSHD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3261 324 Pfam B3 DNA binding domain 20 109 IPR003340 GO:0003677
Ahy20g3261 324 Pfam B3 DNA binding domain 244 322 IPR003340 GO:0003677
Ahy20g3261 324 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 322 - -
Ahy20g3261 324 PANTHER B3 DOMAIN-CONTAINING 14 322 - -
Ahy20g3261 324 Gene3D - 15 112 IPR015300 -
Ahy20g3261 324 MobiDBLite consensus disorder prediction 128 164 - -
Ahy20g3261 324 Gene3D - 212 324 IPR015300 -
Ahy20g3261 324 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Ahy20g3261 324 CDD B3_DNA 18 109 IPR003340 GO:0003677
Ahy20g3261 324 ProSiteProfiles B3 DNA-binding domain profile. 268 323 IPR003340 GO:0003677
Ahy20g3261 324 CDD B3_DNA 244 321 IPR003340 GO:0003677
Ahy20g3261 324 SUPERFAMILY DNA-binding pseudobarrel domain 222 322 IPR015300 -
Ahy20g3261 324 SUPERFAMILY DNA-binding pseudobarrel domain 18 118 IPR015300 -
Ahy20g3261 324 SMART B3_2 229 323 IPR003340 GO:0003677
Ahy20g3261 324 SMART B3_2 19 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3261 Ahy-Chr20 143061474 143063461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3261 19 324 B3 DNA Binding Superfamily AT3G18990 27.616 9.65e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3261 B3 1.30E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3261 - - aip:107621185 520.005