Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3260 ATGCATGATGCTGATGTTGTGTTTGAAAATGGTTGGAAAGAGTTTGTTAAATATTACTCTATAAATCATGGGTATGTGTTGAAGTTTGAATATAATGGAAATTCCAAATTGGGGGTTCAAATTTGTGACAAGAGTGGCCTTGAAATAGAGTATCCTGTCAATGTTAATCAACAAGAAAAGGTTAACATTATTGAGATCAGTGATGAAGAAGTTCAAGCGTTCGATGAAATGCCTCAACGACAAAACAATAGAAGGAAATCACCAAAGTCTCAGCTTAACCAAAGGAATGGTAATCAGTCTCAAGGGACAAGTTTTTTGAAGTCAACATCAACATCCATTGAAAAAGAATTAGATGGTGATAGAAAGGAAACTCAAACAACTTCAAAGGTTAAAAGTCCCCTCGCTGAAACAAGTGGTACTCTGAAGGAAGCTGAGAAATTCACCTCAAAAAATCCGTTTTTCATCATAAATGTAACGAAAAAATTTCTGGACCAAAGCAGACCGAATGTACCAATTGACTTTGTCAAAAAGTACCTGAAGCAAAAGCAGTTTGCCATGGTAAGGTTTAGAGATAAATTGTGGCCTTTGAAGTTGCTGCCTTATGTAACAAAAAAGGAATCAATCCGGTTGTCCACCGGGTGGAACTTGTTTGCTAAAGCAAGTGAATTGCAAGCTGGAGATGTTTGCATCTTTGAGCTGATCAACATGAAAAATTCAGAGTTTGATGTTCACTTCTTTAGATGTCACTCCTAA 753 0.3652 MHDADVVFENGWKEFVKYYSINHGYVLKFEYNGNSKLGVQICDKSGLEIEYPVNVNQQEKVNIIEISDEEVQAFDEMPQRQNNRRKSPKSQLNQRNGNQSQGTSFLKSTSTSIEKELDGDRKETQTTSKVKSPLAETSGTLKEAEKFTSKNPFFIINVTKKFLDQSRPNVPIDFVKKYLKQKQFAMVRFRDKLWPLKLLPYVTKKESIRLSTGWNLFAKASELQAGDVCIFELINMKNSEFDVHFFRCHS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3260 250 MobiDBLite consensus disorder prediction 113 127 - -
Ahy20g3260 250 MobiDBLite consensus disorder prediction 84 112 - -
Ahy20g3260 250 Gene3D - 134 249 IPR015300 -
Ahy20g3260 250 ProSiteProfiles B3 DNA-binding domain profile. 153 249 IPR003340 GO:0003677
Ahy20g3260 250 Pfam B3 DNA binding domain 153 247 IPR003340 GO:0003677
Ahy20g3260 250 ProSiteProfiles B3 DNA-binding domain profile. 1 45 IPR003340 GO:0003677
Ahy20g3260 250 SUPERFAMILY DNA-binding pseudobarrel domain 6 52 IPR015300 -
Ahy20g3260 250 PANTHER B3 DOMAIN-CONTAINING 3 248 - -
Ahy20g3260 250 SUPERFAMILY DNA-binding pseudobarrel domain 147 248 IPR015300 -
Ahy20g3260 250 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 248 - -
Ahy20g3260 250 SMART B3_2 153 249 IPR003340 GO:0003677
Ahy20g3260 250 MobiDBLite consensus disorder prediction 74 135 - -
Ahy20g3260 250 CDD B3_DNA 152 247 IPR003340 GO:0003677
Ahy20g3260 250 Gene3D - 1 46 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3260 Ahy-Chr20 143050109 143053229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3260 3 249 B3 DNA Binding Superfamily AT3G18990 24.739 4.35e-17 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3260 B3 4.50E-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3260 - - ahf:114926089 507.294