LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy20g3259	ATGACTGAGGAAGATCAAGCCACACCACCACCCATGAATAATTCCAATGCAGTCCTTTTCTTCAAGATCATACTTTCAACAGCTCTTGAGGATGGAAAACTTAAGATCCCAAACAGTTTCACTAAAAAATATGGTGATGGCCTTTCAAACCCAGTGTTTCTTAAGCCTCCGGATGGAACCGAATGGAAAGTAGAATGGACTAAGCAAGATGATGGGATTTTTCTTGAACATGGTTGGAATGAGTTTGCTATGTATTACTCTCTAGATCATGGGCATTTGCTGTTTTTTGAGTACAAAAACACTTCTCAATTTGAGGTACAAATATGTGAAGTGAGTGGCCTTGAAATAGATTATCCTTTCCATGTCATTCAACAAGAAAATGAAAACATTGAACAGATCAATCATGAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTCTTATCCTCAACCATCAAACACAACTAGAGAAGTTAGAACAAGCTGCAGTTTGCAAAACTTGCCTCTTATTCACCAAATTAATGGTAATGAGTGTCAAGGAACAAGCTTTGACGAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAACGGTTAAAGCAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACAAAACCCCTCTTTCATGGTTATCATGAAACCTTCCTATGCTAAAAGTTACTCGATGAATATCCCTTCAAAATTCACAGCAAAATATTTGAAGAAGCAAGCGACAGCCATCCTTGAGGTCCATGATGGGGGGAGAACATGGGCTGTTACTTACAGTTTTGGCAAATTCAGTTCTGGATGGAAGAGATTTGCAAAAGACAATAGTTTGAATGTAGGGGACATTTGTGTTTTTGAGCTCACCAATCCCAAAGACCTTTATTTTAAGGTATCCATAACTCGAATTGAAGAAGAGGAACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGAACCAGCAAAAGTCAATTATGTTGAAAGCAAAAGTGACATTATGATTAAAGTCAAAAAGGAAACACAAGAAACTTCATTGGCGACTCCTCCCGGCTTTGAGCCAAATGAAGAAGCCCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGGTCATTATAAAGCCGAGCTTTCTGAGGCAACGCAGACCGAGTATACCAGCTTTCTTCATCAGAAATCACCTCAAAAAGACTCATATTGTGACATTCAAGTTTGGAGAGACACGGTGGCGTATAAAGTTGCTGCGTTACACAAGATACAGAAGTCCAATCACATTATCGAATGGTTGGAGCCTATTTTGTAGAGGAAGTAGATTGAAAGCAGGAGATGTTTGCATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCACTCCTAG	1488	0.3884	MTEEDQATPPPMNNSNAVLFFKIILSTALEDGKLKIPNSFTKKYGDGLSNPVFLKPPDGTEWKVEWTKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQFEVQICEVSGLEIDYPFHVIQQENENIEQINHEADQVFDDMPQSQNNRMKSPMSYPQPSNTTREVRTSCSLQNLPLIHQINGNECQGTSFDESTFASIKKELDEDIGGSTPCPRVERLKQTLNKATTSKSRQNPSFMVIMKPSYAKSYSMNIPSKFTAKYLKKQATAILEVHDGGRTWAVTYSFGKFSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVSITRIEEEELPLSQVEGDRVNCLEPAKVNYVESKSDIMIKVKKETQETSLATPPGFEPNEEALKEAKKFTSENPFFMVIIKPSFLRQRRPSIPAFFIRNHLKKTHIVTFKFGETRWRIKLLRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAVFDVHLFRCHS*	496

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy20g3259	495	Gene3D	-	380	494	IPR015300	-
Ahy20g3259	495	Gene3D	-	218	330	IPR015300	-
Ahy20g3259	495	SUPERFAMILY	DNA-binding pseudobarrel domain	14	111	IPR015300	-
Ahy20g3259	495	Pfam	B3 DNA binding domain	239	325	IPR003340	GO:0003677
Ahy20g3259	495	Pfam	B3 DNA binding domain	398	492	IPR003340	GO:0003677
Ahy20g3259	495	Pfam	B3 DNA binding domain	21	110	IPR003340	GO:0003677
Ahy20g3259	495	PANTHER	B3 DOMAIN-CONTAINING	11	327	-	-
Ahy20g3259	495	PANTHER	B3 DOMAIN-CONTAINING	365	493	-	-
Ahy20g3259	495	Gene3D	-	12	113	IPR015300	-
Ahy20g3259	495	SMART	B3_2	239	329	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy20g3259	Ahy-Chr20	143044342	143047844	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy20g3259	380	494	B3 DNA Binding Superfamily	AT3G18990	34.188	1.02e-11	64.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Ahy20g3259		B3	2.50E-12	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy20g3259	-		-	adu:107471690	991.49

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