Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3259 ATGACTGAGGAAGATCAAGCCACACCACCACCCATGAATAATTCCAATGCAGTCCTTTTCTTCAAGATCATACTTTCAACAGCTCTTGAGGATGGAAAACTTAAGATCCCAAACAGTTTCACTAAAAAATATGGTGATGGCCTTTCAAACCCAGTGTTTCTTAAGCCTCCGGATGGAACCGAATGGAAAGTAGAATGGACTAAGCAAGATGATGGGATTTTTCTTGAACATGGTTGGAATGAGTTTGCTATGTATTACTCTCTAGATCATGGGCATTTGCTGTTTTTTGAGTACAAAAACACTTCTCAATTTGAGGTACAAATATGTGAAGTGAGTGGCCTTGAAATAGATTATCCTTTCCATGTCATTCAACAAGAAAATGAAAACATTGAACAGATCAATCATGAGGCAGATCAAGTGTTCGATGATATGCCTCAAAGCCAAAACAATAGAATGAAATCACCAATGTCTTATCCTCAACCATCAAACACAACTAGAGAAGTTAGAACAAGCTGCAGTTTGCAAAACTTGCCTCTTATTCACCAAATTAATGGTAATGAGTGTCAAGGAACAAGCTTTGACGAGTCAACATTTGCATCTATTAAGAAAGAATTGGATGAGGATATAGGTGGTAGCACTCCATGTCCAAGAGTGGAACGGTTAAAGCAAACCTTAAACAAAGCTACAACTTCCAAATCTAGACAAAACCCCTCTTTCATGGTTATCATGAAACCTTCCTATGCTAAAAGTTACTCGATGAATATCCCTTCAAAATTCACAGCAAAATATTTGAAGAAGCAAGCGACAGCCATCCTTGAGGTCCATGATGGGGGGAGAACATGGGCTGTTACTTACAGTTTTGGCAAATTCAGTTCTGGATGGAAGAGATTTGCAAAAGACAATAGTTTGAATGTAGGGGACATTTGTGTTTTTGAGCTCACCAATCCCAAAGACCTTTATTTTAAGGTATCCATAACTCGAATTGAAGAAGAGGAACTTCCGCTATCACAAGTTGAAGGAGACAGAGTCAATTGTTTAGAACCAGCAAAAGTCAATTATGTTGAAAGCAAAAGTGACATTATGATTAAAGTCAAAAAGGAAACACAAGAAACTTCATTGGCGACTCCTCCCGGCTTTGAGCCAAATGAAGAAGCCCTGAAAGAAGCTAAGAAATTCACCTCAGAAAATCCATTTTTCATGGTCATTATAAAGCCGAGCTTTCTGAGGCAACGCAGACCGAGTATACCAGCTTTCTTCATCAGAAATCACCTCAAAAAGACTCATATTGTGACATTCAAGTTTGGAGAGACACGGTGGCGTATAAAGTTGCTGCGTTACACAAGATACAGAAGTCCAATCACATTATCGAATGGTTGGAGCCTATTTTGTAGAGGAAGTAGATTGAAAGCAGGAGATGTTTGCATCTTTGAGCTAATCAACAAAGAAGATGCAGTGTTTGATGTTCACTTGTTTAGGTGCCACTCCTAG 1488 0.3884 MTEEDQATPPPMNNSNAVLFFKIILSTALEDGKLKIPNSFTKKYGDGLSNPVFLKPPDGTEWKVEWTKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQFEVQICEVSGLEIDYPFHVIQQENENIEQINHEADQVFDDMPQSQNNRMKSPMSYPQPSNTTREVRTSCSLQNLPLIHQINGNECQGTSFDESTFASIKKELDEDIGGSTPCPRVERLKQTLNKATTSKSRQNPSFMVIMKPSYAKSYSMNIPSKFTAKYLKKQATAILEVHDGGRTWAVTYSFGKFSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVSITRIEEEELPLSQVEGDRVNCLEPAKVNYVESKSDIMIKVKKETQETSLATPPGFEPNEEALKEAKKFTSENPFFMVIIKPSFLRQRRPSIPAFFIRNHLKKTHIVTFKFGETRWRIKLLRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAVFDVHLFRCHS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3259 495 Gene3D - 380 494 IPR015300 -
Ahy20g3259 495 Gene3D - 218 330 IPR015300 -
Ahy20g3259 495 SUPERFAMILY DNA-binding pseudobarrel domain 14 111 IPR015300 -
Ahy20g3259 495 Pfam B3 DNA binding domain 239 325 IPR003340 GO:0003677
Ahy20g3259 495 Pfam B3 DNA binding domain 398 492 IPR003340 GO:0003677
Ahy20g3259 495 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Ahy20g3259 495 PANTHER B3 DOMAIN-CONTAINING 11 327 - -
Ahy20g3259 495 PANTHER B3 DOMAIN-CONTAINING 365 493 - -
Ahy20g3259 495 Gene3D - 12 113 IPR015300 -
Ahy20g3259 495 SMART B3_2 239 329 IPR003340 GO:0003677
Ahy20g3259 495 SMART B3_2 398 494 IPR003340 GO:0003677
Ahy20g3259 495 SMART B3_2 20 112 IPR003340 GO:0003677
Ahy20g3259 495 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Ahy20g3259 495 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 327 - -
Ahy20g3259 495 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 365 493 - -
Ahy20g3259 495 CDD B3_DNA 397 492 IPR003340 GO:0003677
Ahy20g3259 495 SUPERFAMILY DNA-binding pseudobarrel domain 392 493 IPR015300 -
Ahy20g3259 495 Coils Coil 123 143 - -
Ahy20g3259 495 CDD B3_DNA 19 109 IPR003340 GO:0003677
Ahy20g3259 495 ProSiteProfiles B3 DNA-binding domain profile. 238 329 IPR003340 GO:0003677
Ahy20g3259 495 CDD B3_DNA 237 327 IPR003340 GO:0003677
Ahy20g3259 495 ProSiteProfiles B3 DNA-binding domain profile. 398 494 IPR003340 GO:0003677
Ahy20g3259 495 SUPERFAMILY DNA-binding pseudobarrel domain 234 332 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3259 Ahy-Chr20 143044342 143047844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3259 380 494 B3 DNA Binding Superfamily AT3G18990 34.188 1.02e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3259 B3 2.50E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3259 - - adu:107471690 991.49