Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3255 ATGCCTTTACATGAAAGAGGTTTCTTTAAAGTTCTTGTTCAAAGCTTTAAGCATGAGTTGAAAATTCCTAAACCTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATCCTATAGTGTTAAAGCTACCAAACACTCTTAAACAAAGAGTATATTGGATTCGAAAGAATGAAGATGAAATTTGGTTGGAAGAAGGTTGGGAACAAGTTGTGAAGGATTTTGGCTTAGAATATTCTCAATTTTTGACTTTTGACTATAAAGGATGGTCTTGCTTTGAAGTCAAAATATATCCCAAGAATGATTCTGAGATAATGCCTCCTCATCATCAAATATGTTTCTTTCAGATTCTTGTTCACAACAAATTTTACCAAAAGCTGAGGGTTCCTAAATGTGCAAATGAATGTTGGAAAAGAATGTCAAATCCTATAAAGTTGGTGTTACCTTATGGTGTTGAGAGGAAAGTGAATTGGACCAAAAGAGGAGAAAAGATTTGGTTGGAACAAGGTTGGGAAAAGGTTGTGGAGTTGTGTGGTTTGAGTCATCAGTGGTTGTTGACTTTTGACTACAATGGAATGTCTCGTTTTGAAGTTAAAGTATATGATAACACTACTTTAAGGGTAGCTTATTATGATGAGTATGATGTTGAGAATAACAAAGATGTTGATGAAACTGAGAGCGAAGATGATGATGATGATGATGATGATGATGATAATGATGATGATGATGATGATGAAGATGAAGATGATGATGATGATGATGGTGATGATGGTGATTTTGCTGAAGATTATTGTGATGAAGAATATCACTATAAGTTTGTTCAAGAACACTTCAAGAGAAAGAAGACCAACACAGTTAATGGGAGCAATAGGAATCCCAGTTTCAAGATTAGAATTCAAGAATCATATGTTGGGTCAAGATGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGATTGTGGGTAACAGAGCTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGGGCCAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTTTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAGACCATGATCGTCAGAGTGCAGAGTGGATGA 1167 0.3642 MPLHERGFFKVLVQSFKHELKIPKPFVKEYWRGVSNPIVLKLPNTLKQRVYWIRKNEDEIWLEEGWEQVVKDFGLEYSQFLTFDYKGWSCFEVKIYPKNDSEIMPPHHQICFFQILVHNKFYQKLRVPKCANECWKRMSNPIKLVLPYGVERKVNWTKRGEKIWLEQGWEKVVELCGLSHQWLLTFDYNGMSRFEVKVYDNTTLRVAYYDEYDVENNKDVDETESEDDDDDDDDDDNDDDDDDEDEDDDDDDGDDGDFAEDYCDEEYHYKFVQEHFKRKKTNTVNGSNRNPSFKIRIQESYVGSRCVAIPATFARKHLEEGPIRMIVGNRAWTVCYKTWRGRARYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMIVRVQSG* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3255 388 MobiDBLite consensus disorder prediction 215 257 - -
Ahy20g3255 388 SMART B3_2 8 99 IPR003340 GO:0003677
Ahy20g3255 388 SMART B3_2 293 386 IPR003340 GO:0003677
Ahy20g3255 388 SMART B3_2 112 202 IPR003340 GO:0003677
Ahy20g3255 388 SUPERFAMILY DNA-binding pseudobarrel domain 288 386 IPR015300 -
Ahy20g3255 388 Gene3D - 271 387 IPR015300 -
Ahy20g3255 388 CDD B3_DNA 291 385 IPR003340 GO:0003677
Ahy20g3255 388 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Ahy20g3255 388 Pfam B3 DNA binding domain 8 97 IPR003340 GO:0003677
Ahy20g3255 388 Pfam B3 DNA binding domain 294 385 IPR003340 GO:0003677
Ahy20g3255 388 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 109 378 - -
Ahy20g3255 388 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 106 - -
Ahy20g3255 388 ProSiteProfiles B3 DNA-binding domain profile. 292 388 IPR003340 GO:0003677
Ahy20g3255 388 Gene3D - 3 100 IPR015300 -
Ahy20g3255 388 Gene3D - 104 203 IPR015300 -
Ahy20g3255 388 ProSiteProfiles B3 DNA-binding domain profile. 5 99 IPR003340 GO:0003677
Ahy20g3255 388 SUPERFAMILY DNA-binding pseudobarrel domain 108 201 IPR015300 -
Ahy20g3255 388 CDD B3_DNA 8 97 IPR003340 GO:0003677
Ahy20g3255 388 PANTHER B3 DOMAIN-CONTAINING 109 378 - -
Ahy20g3255 388 PANTHER B3 DOMAIN-CONTAINING 7 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3255 Ahy-Chr20 143026936 143029064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3255 264 374 REM Transcription Factor Family AT1G49480 34.400 9.19e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3255 B3 7.40E-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3255 - - ahf:112718388 670.618