Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3254 ATGGCTTTTAATCAACAAGGAGAATCCACTAATAGTGTTGTTAGTTTCTTCAAGATCATTTGTCGTTGGCATATTCGAGATGAGAAGATTAAGCTTCCAACGGAATTCACAAACAAATATGGATTGAAACTCCCAAATCCGGTGATTCTGAAAGTTGTAAATGGCAACCAAAAGAAAGTGCATTGGACCAATATTAATGGTTCCATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGCACTACTCTGTCTCCCATGGTCACCTTTTGTTGTTCAAATATTGTCTTGATGCTTCATATTTTAGGGTTCAAATATTTGACAACACTACTCTTGAAATTGATTACCCTTCTCCTGAACTCAATTATGCTGATTATGATGATGATGATTTTGATTTTGATGATGATGGTGATGGTGATGGTGATGATGATGTTATGAAGGTTCACTATGATCAATATCAATTCAAAGAGAAAAATAAGGGTATTGCTGATGCTATAAAGAGTAGAGACAGACAAGAGAGACAAGATGGCAATCCCAATTTTGAGGTTGTCATGAGGGATTCATATATTAATGGAGGAAGATGCATGGCCATACCATCTAATTTTGCAAGGAAGTACATGAAGGAAGGAGGGTACCTACTAAGAGTGGAAGATGGGAGGGCATGGAAAGTGATGTTTAAGACTTGGAGTGGAGATGGAGTGCCTTACAAGAAATACAAATTGCAAAAGGGTTGGGCCAAATTTAGCCAAGGAAACAAGTTACAAAAGGATGATGTTTGTGTCTTTGAGCTTCTTTACAACCACAATTCTAATGGTAGCTCCACTACCATACCAACCTTCAATGTTCTAATTCACCGGAACCACATTGGTAGCAGCTATTCACCATGA 888 0.3773 MAFNQQGESTNSVVSFFKIICRWHIRDEKIKLPTEFTNKYGLKLPNPVILKVVNGNQKKVHWTNINGSIWFIGKEWKEFLEHYSVSHGHLLLFKYCLDASYFRVQIFDNTTLEIDYPSPELNYADYDDDDFDFDDDGDGDGDDDVMKVHYDQYQFKEKNKGIADAIKSRDRQERQDGNPNFEVVMRDSYINGGRCMAIPSNFARKYMKEGGYLLRVEDGRAWKVMFKTWSGDGVPYKKYKLQKGWAKFSQGNKLQKDDVCVFELLYNHNSNGSSTTIPTFNVLIHRNHIGSSYSP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3254 295 PANTHER B3 DOMAIN-CONTAINING 155 286 - -
Ahy20g3254 295 PANTHER B3 DOMAIN-CONTAINING 9 159 - -
Ahy20g3254 295 ProSiteProfiles B3 DNA-binding domain profile. 181 288 IPR003340 GO:0003677
Ahy20g3254 295 SMART B3_2 16 110 IPR003340 GO:0003677
Ahy20g3254 295 SMART B3_2 181 273 IPR003340 GO:0003677
Ahy20g3254 295 CDD B3_DNA 15 108 IPR003340 GO:0003677
Ahy20g3254 295 CDD B3_DNA 179 264 IPR003340 GO:0003677
Ahy20g3254 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 155 286 - -
Ahy20g3254 295 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Ahy20g3254 295 SUPERFAMILY DNA-binding pseudobarrel domain 175 268 IPR015300 -
Ahy20g3254 295 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
Ahy20g3254 295 Gene3D - 9 111 IPR015300 -
Ahy20g3254 295 Gene3D - 156 291 IPR015300 -
Ahy20g3254 295 Pfam B3 DNA binding domain 181 266 IPR003340 GO:0003677
Ahy20g3254 295 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3254 Ahy-Chr20 143021534 143024372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3254 4 129 B3 DNA Binding Superfamily AT4G01580 33.333 5.40e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3254 B3 1.60E-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3254 - - ahf:112784208 590.112