Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3252 ATGTCTTCTCAAGAACGTGATGTCGTTCACTTCTTCAAGGTTATTCTTGAAAAGAACCTTCTTGATGATGGATTTCTGAGATTGCCAAAGAGTTTTGTGCATAATTACTGGAAACGAATTACGTCACGTTCTGTTTTTCTAAGTCTTCCAAACGGAGCTGAATTGGAAGTTCATTGGTCAAGGGATGAACGTGGTGACGTTGTGTTTGGCCACGGTTGGAAAGAGTTTGCACAATACGTGTCTCTCCAAGCGACACAGTTTCTCTTGTTCCGTTATGAACTGAAAAAAACTAATAATAATAATAATAATAAGTTTTATGTTATAGTTTTGGGTTCAAGTGGTTTAGAAATTAAGTACCCATGTTCTAATTCTGAGAAAAAAAATGAAAATGTTAATGTTAATGTTGTTGAAAAAGGGCAAAAGGGTGAAAAAAAGAGTGATGGTTCTTTTGAGTTTGTTAATGGAAAAAGACGGAAATCTCTCTTGTCACCGCCACAATCACCACCTCCACCACCACCACCACTGGTAATTTCCGATGATGAAACTAATAGTTTCAAAAGGAAGAGTATTATAAAAGAAGAGCCTGAAGATTACTCTATTGATGGTGAAATCAATACCACTAAAAGAAAAAGGAGAGCTTCTAGGAATTTTGATTATATTGCCAAGGAAAAAGATTATGATAATCCAGAAGTGTTGGACAATAAAACCATGAAGAAGTTTCAAGAGAAAGTGAAGAGTAGGTTCCAAACTGGGAATCCATTTTTTGTATGTGCACTTGGGAAAACCTATTCTGACAGAGACCTCTTGGTTATACCAAGCTATTTTGCTAAACCAATTCTTGGGAATAAAGAAGGAAATGCAAAGCTCTTTCTTGTTGATGATCCGAACAAATGTTGGGATGTGCAGATGAGAATTTCTGCTTGCAGACAATTTATAATTACAAATGGTTGGAAGAAATTCTCAACATTCTATAGTTTAAAACTTGGTGACGCTTGTGTCTTTGAGTTGGTCGATCCAATCGATATTTTATTCAAAGTTCATATTCGTAGTTATGGAGAAGACCCTTTGACTCCTAGCTCTCCTGGTGATACCAACTGA 1098 0.3616 MSSQERDVVHFFKVILEKNLLDDGFLRLPKSFVHNYWKRITSRSVFLSLPNGAELEVHWSRDERGDVVFGHGWKEFAQYVSLQATQFLLFRYELKKTNNNNNNKFYVIVLGSSGLEIKYPCSNSEKKNENVNVNVVEKGQKGEKKSDGSFEFVNGKRRKSLLSPPQSPPPPPPPLVISDDETNSFKRKSIIKEEPEDYSIDGEINTTKRKRRASRNFDYIAKEKDYDNPEVLDNKTMKKFQEKVKSRFQTGNPFFVCALGKTYSDRDLLVIPSYFAKPILGNKEGNAKLFLVDDPNKCWDVQMRISACRQFIITNGWKKFSTFYSLKLGDACVFELVDPIDILFKVHIRSYGEDPLTPSSPGDTN* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3252 365 Gene3D - 2 114 IPR015300 -
Ahy20g3252 365 MobiDBLite consensus disorder prediction 157 181 - -
Ahy20g3252 365 Gene3D - 233 351 IPR015300 -
Ahy20g3252 365 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 349 - -
Ahy20g3252 365 MobiDBLite consensus disorder prediction 163 177 - -
Ahy20g3252 365 SUPERFAMILY DNA-binding pseudobarrel domain 5 113 IPR015300 -
Ahy20g3252 365 ProSiteProfiles B3 DNA-binding domain profile. 11 113 IPR003340 GO:0003677
Ahy20g3252 365 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Ahy20g3252 365 Pfam B3 DNA binding domain 11 94 IPR003340 GO:0003677
Ahy20g3252 365 Pfam B3 DNA binding domain 263 349 IPR003340 GO:0003677
Ahy20g3252 365 CDD B3_DNA 10 93 IPR003340 GO:0003677
Ahy20g3252 365 PANTHER B3 DOMAIN-CONTAINING 4 349 - -
Ahy20g3252 365 SUPERFAMILY DNA-binding pseudobarrel domain 248 350 IPR015300 -
Ahy20g3252 365 CDD B3_DNA 269 350 IPR003340 GO:0003677
Ahy20g3252 365 SMART B3_2 255 352 IPR003340 GO:0003677
Ahy20g3252 365 SMART B3_2 11 113 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3252 Ahy-Chr20 142998137 143001378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3252 11 346 B3 DNA Binding Superfamily AT3G18990 24.789 1.33e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3252 B3 2.80E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3252 - - ahf:112717071 608.216