Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3251 ATGTCTATGCATTCATCGTCACCAGGTTTCTTTAAGATACTTGTACACAACAAGTTCAAAAAAGAATTGATGATTCCCAAGAGTTTTGTGAGAAAATATTGGGAAGGGATATCAAATCCTATAATACTAAAGCTACCAAATAATAGGGAAGAAGAAGTATATTGGAGTCAGAGGAAAAAAAATGAAATTTGGTTGCAAAATGGTTGGGATGAAGTTGTGAAATTATGTCACTTGGAATATGAATTTTTGTTAACATTTGAATACAAAGAAAGATCATGCTTTGAACTCAAAGTATATGATAAGAGTGCTTCACAAATAAACTACCATTCAGATTGTGGAGTTCATGAAAATAATCATGATTATATTGTTGTTGATGATCATGTTCAAAGGGAACCAAAGGCAAAGAAGAGAACCAACAAAGCAGGAATTAGAAAAAGCATGCTCAATAATGTTAGGGAGAAAATAGAGATGGCTGAAGCCTTATCTACAAAGCTGAAAAATCCTTCTTTTTTTCTTGTTCTGAAGCCTTCATATGTTCATGGCAATGCTAATCTGGTGTATAGAAGCTAA 570 0.3281 MSMHSSSPGFFKILVHNKFKKELMIPKSFVRKYWEGISNPIILKLPNNREEEVYWSQRKKNEIWLQNGWDEVVKLCHLEYEFLLTFEYKERSCFELKVYDKSASQINYHSDCGVHENNHDYIVVDDHVQREPKAKKRTNKAGIRKSMLNNVREKIEMAEALSTKLKNPSFFLVLKPSYVHGNANLVYRS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3251 189 SUPERFAMILY DNA-binding pseudobarrel domain 3 102 IPR015300 -
Ahy20g3251 189 Gene3D - 2 104 IPR015300 -
Ahy20g3251 189 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 182 - -
Ahy20g3251 189 PANTHER B3 DOMAIN-CONTAINING 4 182 - -
Ahy20g3251 189 CDD B3_DNA 8 100 IPR003340 GO:0003677
Ahy20g3251 189 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Ahy20g3251 189 SMART B3_2 10 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3251 Ahy-Chr20 142994057 142995153 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3251 8 122 B3 DNA Binding Superfamily AT3G18990 31.034 7.19e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3251 B3 1.60E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3251 - - ahf:112784138 394.045