Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3250 ATGGCCTTCTATAATAACATGTTTTTTAAGGTTCTTATTGATCCCAACCAACTGAGGAAAAACCAGCCAAAATGGAAGAAACCGTCATCACTTCATGAATTGGAGATACCACCAAGTTTTGTAGAGAAAAATTGGAAAGGATTGTCAAATCCTATATTATTGGAGCTACCAACTGGACATAGAATAGAAATAAAATGGATCATGAAGAAAAATAATAGTGTTTGGTTAAATGAAGGGTGGAGAAGAGTTGTGGAATTGTTAGGATTAAAACATGAATATTTTGTGACTTTTAAATATAATGGAAAATCGAAATTTGAACTCATAGTGTTTCATCCGAATACTTTAGAAATTGATTACTCAAATGTGAGAAATTTCTATAATGATGATCACCATCAAGGTGCAAATGAAAATCACGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAATGATGATGATGATGATGATGATGATGACTCTATTGAGATTATTGCTGAAGAGCCAGAACAATTCAACAACAGAAGCAAAGAAGGAACTTGTAAAAGCATGCTCAAAGAAGTTCATGAAAATCATGACTATATTGTAATTGATGATGATGATGATGAAGAAAGGCACTCTAAACCACTCTTGATGAAAAAGAGAACCAAAACAGAAGGAACAAGTAAAAGCATGCTCAAAAAAGTGAGGAGAAATATGAAATGTGGTGATCACCGGAGGAAGGCACTGGAGAGGGCTGAAGCCATCTCTTCAAAGCTGAAAAATCCTTCTTTTGTTCGTGATTTGAGGCGTTCATATGTTGATTACGGGATCCTGAAAGTGACAAAAAGTTTTGTGAAGAAATATTGGAAAGAAGTATCAAATCCTATATTGTTGGAGCTACCGTCGGGTGATAAAATAAAAGTAAGATGGAATAAAAAAGAAGATGATAGTATATGGTTGAACGAAGGTTGGAAAAGAGTCGTAGAATTATTAGAATTAAAACACCAATATTTTGTGATTTTTAAATATAAAGGAGAATCTAAATTTGAGCTTATAGTGTTTGATTTAAGTGCTATGGAGATCGATTATTTAAGTTCGAAAAGTTTTCGTAATGATTATCATCAAGGGGAAAATAGAAATCATGATGATGACGACGACGACAATCAGCCTATTGAAACAGTGAATGAAAGACAAGAACAATTCAGAAGAAGAAGCAGAGCAGGAGCTTGTAGTGAAAGACCTAAAAGAGTTCAAAGTGATTCAAAAATTGCTCCGAAAAAGGATAATAAACCGTTGCGTATACCAATCGAGTTTTCGAGAAAGAACTTACATGGGTTAGAGGGAAAAGCCAAAATTGGAGTTAATGGTAACATGAGATGGGATATGGAGTTAAGATTTTGTGGTGATAGAGCTACTTTCAATGCTGGTTGGAGAAATGTTTGCAACGATTTTGGCTTAAAATTTGGTGATGTTTGTGTATTTGAGATGATTAAGGACACTCCACTTTTCTTCAACTTTTTTCTCATCAGACCCAAACAGCAACCAATCAACCTTTGCCACCAAAACTTGCCAGACCATCATCAAAGCCTCCCTCAGCTAAACAAAGTGCAAGGGCAAACCAGTCAATCTAGAAAAAGAAAAAGAAGCAGTGATGGAACTTCTTTCAGAATCCGTGACAGAGCTCCCAACATGCAGGAAAATCAATTTATCCTTGAAATTAAAGATTATCACCTTAGTGGATCTACTGTGTTCATACCAAACGGATTTTGTCGTAGGCACAAAGATTGTCTTGGAAAACTTGTGAATTTGAAATTTGGAGAAATTTTACGGCCAGTGAAATTGTTAGCACGCGGTGCATTTTCTGAAGGATGGTTGAATTTTGCAAAAGAATGCAAATTGAATACTGGTGACTTTTGTTCCTTCGAACTCGTTGATGACCAAAATCTTATCTTTGAAGTTTCAACTAAAAAATCAAAATAG 1974 0.3501 MAFYNNMFFKVLIDPNQLRKNQPKWKKPSSLHELEIPPSFVEKNWKGLSNPILLELPTGHRIEIKWIMKKNNSVWLNEGWRRVVELLGLKHEYFVTFKYNGKSKFELIVFHPNTLEIDYSNVRNFYNDDHHQGANENHDDDDSIEIIAEEPEQFNDDDDDDDDDSIEIIAEEPEQFNNRSKEGTCKSMLKEVHENHDYIVIDDDDDEERHSKPLLMKKRTKTEGTSKSMLKKVRRNMKCGDHRRKALERAEAISSKLKNPSFVRDLRRSYVDYGILKVTKSFVKKYWKEVSNPILLELPSGDKIKVRWNKKEDDSIWLNEGWKRVVELLELKHQYFVIFKYKGESKFELIVFDLSAMEIDYLSSKSFRNDYHQGENRNHDDDDDDNQPIETVNERQEQFRRRSRAGACSERPKRVQSDSKIAPKKDNKPLRIPIEFSRKNLHGLEGKAKIGVNGNMRWDMELRFCGDRATFNAGWRNVCNDFGLKFGDVCVFEMIKDTPLFFNFFLIRPKQQPINLCHQNLPDHHQSLPQLNKVQGQTSQSRKRKRSSDGTSFRIRDRAPNMQENQFILEIKDYHLSGSTVFIPNGFCRRHKDCLGKLVNLKFGEILRPVKLLARGAFSEGWLNFAKECKLNTGDFCSFELVDDQNLIFEVSTKKSK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3250 657 ProSiteProfiles B3 DNA-binding domain profile. 261 355 IPR003340 GO:0003677
Ahy20g3250 657 SUPERFAMILY DNA-binding pseudobarrel domain 258 361 IPR015300 -
Ahy20g3250 657 Pfam B3 DNA binding domain 427 503 IPR003340 GO:0003677
Ahy20g3250 657 Pfam B3 DNA binding domain 269 351 IPR003340 GO:0003677
Ahy20g3250 657 Pfam B3 DNA binding domain 30 109 IPR003340 GO:0003677
Ahy20g3250 657 PANTHER B3 DOMAIN-CONTAINING 535 654 - -
Ahy20g3250 657 CDD B3_DNA 260 353 IPR003340 GO:0003677
Ahy20g3250 657 CDD B3_DNA 7 110 IPR003340 GO:0003677
Ahy20g3250 657 SUPERFAMILY DNA-binding pseudobarrel domain 429 505 IPR015300 -
Ahy20g3250 657 Gene3D - 240 357 IPR015300 -
Ahy20g3250 657 Gene3D - 391 510 IPR015300 -
Ahy20g3250 657 Gene3D - 551 656 IPR015300 -
Ahy20g3250 657 CDD B3_DNA 430 501 IPR003340 GO:0003677
Ahy20g3250 657 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 276 421 - -
Ahy20g3250 657 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 535 654 - -
Ahy20g3250 657 SUPERFAMILY DNA-binding pseudobarrel domain 28 120 IPR015300 -
Ahy20g3250 657 SMART B3_2 422 508 IPR003340 GO:0003677
Ahy20g3250 657 SMART B3_2 567 652 IPR003340 GO:0003677
Ahy20g3250 657 SMART B3_2 8 113 IPR003340 GO:0003677
Ahy20g3250 657 SMART B3_2 262 355 IPR003340 GO:0003677
Ahy20g3250 657 ProSiteProfiles B3 DNA-binding domain profile. 34 113 IPR003340 GO:0003677
Ahy20g3250 657 PANTHER B3 DOMAIN-CONTAINING 430 508 - -
Ahy20g3250 657 Gene3D - 3 114 IPR015300 -
Ahy20g3250 657 ProSiteProfiles B3 DNA-binding domain profile. 415 510 IPR003340 GO:0003677
Ahy20g3250 657 MobiDBLite consensus disorder prediction 395 426 - -
Ahy20g3250 657 MobiDBLite consensus disorder prediction 533 555 - -
Ahy20g3250 657 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 430 508 - -
Ahy20g3250 657 SUPERFAMILY DNA-binding pseudobarrel domain 562 649 IPR015300 -
Ahy20g3250 657 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 275 - -
Ahy20g3250 657 PANTHER B3 DOMAIN-CONTAINING 276 421 - -
Ahy20g3250 657 PANTHER B3 DOMAIN-CONTAINING 8 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3250 Ahy-Chr20 142978268 142989942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3250 537 653 B3 DNA Binding Superfamily AT3G18990 25.984 1.07e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy20g3250 B3 2.90E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3250 - - ahf:112786607 1304.27