Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3222 ATGACTGGTGATGAAGTTGATAGTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAGGAAGCCTTGGTAACGCATCCAGACGATGCTCTGGATCGATGGGAGAAAATTGCGGCCGATGTACCGGGGAAAACGGTAGAAGAAATTAAGCAGCATTATGAGCTCTTGGTTGAAGATGTTAATCTGATTGAATCTGGTTGCGTGACTCTACCGTCTTATAATTCTTCTTTGGAAGGCTCAGCAAATCATGCAAGTGATGAAGGAGGTGGCAAGAAGGGGAAGCATGATAGCGAGTCTAATCATGGAACTAAAGCTTCAAGATCAGATCAGGAAAGGCGAAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTGTTTCTTCTTGGCTTGGATAAGTACGGAAAAGGCGACTGGCGAAGCATATCGAGAAACTTTGTCGTGACAAGAACGCCGACGCAAGTAGCAAGCCATGCTCAAAAATACTTCATTCGTTTGAACTCCATGAACAAAGATAGAAGGCGATCGAGCATACACGATATCACCAGTGTTAACAATGGTGAAGTTTCGGCACCTCAAGGACCAATTACAGGTCAAACAAATGGTCCTCCACCAAATTCCGCCATCAAATCACCGAAACAACCACCTCCTCCGGCTTCAACCGGTGTTCCGGGAGTAGGACTATACTCTGCTCCTACCATTGGACAACCTATAGCAGGACCCTTAGTATCAGCTGTTGGCACGCCGGTGAATCTTCCGCCCCCTGCACACATTGCATACGGTATTCGAGCCCCAATTCCCGGCGGCGCCGTTGTTCCCGGTGCACCGGTGAACATGGTTCCCATGACATATCAGATGCCAAGCACATCTGCTTCTCACAGGTGA 885 0.4802 MTGDEVDSSSEWSWEQDKAFEEALVTHPDDALDRWEKIAADVPGKTVEEIKQHYELLVEDVNLIESGCVTLPSYNSSLEGSANHASDEGGGKKGKHDSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEVSAPQGPITGQTNGPPPNSAIKSPKQPPPPASTGVPGVGLYSAPTIGQPIAGPLVSAVGTPVNLPPPAHIAYGIRAPIPGGAVVPGAPVNMVPMTYQMPSTSASHR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3222 294 CDD SANT 11 58 IPR001005 -
Ahy20g3222 294 PANTHER TRANSCRIPTION FACTOR KUA1 7 283 - -
Ahy20g3222 294 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 283 - -
Ahy20g3222 294 ProSiteProfiles SANT domain profile. 119 167 IPR017884 -
Ahy20g3222 294 SUPERFAMILY Homeodomain-like 113 168 IPR009057 -
Ahy20g3222 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Ahy20g3222 294 MobiDBLite consensus disorder prediction 86 116 - -
Ahy20g3222 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 167 IPR017930 -
Ahy20g3222 294 CDD SANT 118 163 IPR001005 -
Ahy20g3222 294 MobiDBLite consensus disorder prediction 180 207 - -
Ahy20g3222 294 MobiDBLite consensus disorder prediction 208 222 - -
Ahy20g3222 294 SMART sant 115 165 IPR001005 -
Ahy20g3222 294 SMART sant 8 60 IPR001005 -
Ahy20g3222 294 MobiDBLite consensus disorder prediction 78 116 - -
Ahy20g3222 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 115 165 IPR006447 GO:0003677
Ahy20g3222 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Ahy20g3222 294 Gene3D - 5 71 - -
Ahy20g3222 294 Pfam Myb-like DNA-binding domain 118 163 IPR001005 -
Ahy20g3222 294 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Ahy20g3222 294 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Ahy20g3222 294 MobiDBLite consensus disorder prediction 173 226 - -
Ahy20g3222 294 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Ahy20g3222 294 Gene3D - 117 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3222 Ahy-Chr20 142743880 142748472 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy20g3222 Myb_DNA-binding 6.90E-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3222 - - gmx:100779792 471.855