Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3162 ATGATGCGTCAGCCTTCTGCTGGTTCCTCCACTGAATTTCACCACCCCGCTCCCGGAGGCCCTCCTCCTCACTACGACGGTCATGGCGATAGTCACGGTGCAAAAAGGATAAGAAAGCTTACTCAACGGAAAGCAGTTGATTACACAAGCACCGTCGTGCGGTATATGCAGGTTCGAATGTGGCAGAGGGATTCGAGGGATAGGACGGTATTGCAACCTACCCCAGCCGCAGCAATTGATATGTTGCCAGCTGCTGGGTACCCGGACAATCCATCTACCAGCTTTGCTGCCAAGTTTGTTCATACCTCTTTAAATAAAAATCGATGTCCAATTAACAGGGTTGTGTGGACTCCAACGGGTCGGCGTCTTATCACAGGTTCTCAGACTGGTGAATTTACCCTCTGGAATGGACAATCTTTTAATTTTGAAATGATTCTTCAGGCTCACGACCAAGCAATTAGATCCATGGTTTGGAGTCACAATGACAACTGGATGGTCTCGGGTGATGATGGTGGTGCAATAAAATATTGGCAGAACAACATGAATAATGTTAAAGCCAACAAATCTGCTCATAAGGAATCAGTCCGTGACTTAAGTTTCTGTAGAACAGATTTAAAGTTCTGTTCGTGCTCTGATGATACCACAGTTAAAGTATGGGATTTTGCAAGATGTCAAGAAGAGCGTTCTTTAACTGGCCATGGTTGGGATGTTAAGAGTGTTGACTGGCATCCTACAAAATCTCTATTAGTATCAGGTGGCAAGGACCAGCTTGTAAAACTCTGGGATGCTAAAACAGGAAGAGAGCTTTGCTCATTTCACGGCCATAAAAGTACTGTACTCTGTGTCAAATGGAATCAAAATGGCAACTGGGTGCTGACAGCCTCAAAGGATCAAATAATAAAGCTTTATGACATAAGGGCTATGAAGGAGCTTGAATCTTTCCGTGGACATCGGAAGGATGTAACTGCTTTGGCGTGGCATCCGTTTCATGAAGAGTACTTTGTCAGTGGAAGTTACGATGGTGCAATATTCCATTGGCTTGTTGGGCATGATACACCGCAAATTGAAATTCCAAATGCTCATGATAATAATGTGTGGGACCTTGCATGGCATCCTATCGGATATCTTCTCTGCAGTGGTAGCAGTGATCACACAACAAAGTTTTGGTGTCGGAATAGGCCAGGAGACACTGGTCGTGATAGATTTAACATGGGATATGCTGAGCAAACTCCTGTAGCTGGTCGAGTTGGTGGTAATTTTCCTGTACCTGAGGGTCCAACAACCCCAGGACCATTTGCCCCTGGGTTGACTCGAAATGAGGGTACAATTCCAGGTGTTGGAGTTGCAATGCCCCTGGCCATTCCTTCGCTTGATACACCTCAGGGAGACCAGCAATCTCATCCAGTATCAATGGGTGCCCCTCCTCTTCCCCCAGGTCCACATCCTTCTCTTCTTGCGTCCAATCAACAGCAACCGTACCAGCAGAATCCTCAGCAGATGCCACAACATCAACACCAGGGAATGCCACATCAGATGGGTCCAATTCCTATGCATCCAAATATGCCACAGCTACAACATCCTTCCCATTCACCCATGCTCCCTCATCCACATATGCCTCGCCCCCCAAGCCAAATGCCCCCTCTTGGAATGGCCGGATCCATGCCAATGATTTCTTCGGTGCCTCCATCTCATCCAAAGCCAATGTCAGGTCCTATGGGGATGCAAGGTGCAATGAATCAGATGGGGCCTCCTATGCCACAAGGTCCCTATGTTGGCATGAATCAAATGCATTCAGGATCCATGCCCAATAGTGGAGGGCCTCCTATTGGAGGCTTTCCAGGCAACATGCCTAACATGCAGGCACCATCAAATGCTGGTTATGGTCAAGGTGGTTCATTCAACCGACCTCAAGGTGGACAAATGCCAATGATGCAAGGGTATAATCCTTACCAGTCTGGAAATCAATCTGGGCTTCCTCCAAACGCACAACCTGGTCATGGCTCACACACTCAAATGCCTCAATAG 2025 0.4726 MMRQPSAGSSTEFHHPAPGGPPPHYDGHGDSHGAKRIRKLTQRKAVDYTSTVVRYMQVRMWQRDSRDRTVLQPTPAAAIDMLPAAGYPDNPSTSFAAKFVHTSLNKNRCPINRVVWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDAKTGRELCSFHGHKSTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSYDGAIFHWLVGHDTPQIEIPNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDTGRDRFNMGYAEQTPVAGRVGGNFPVPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLAIPSLDTPQGDQQSHPVSMGAPPLPPGPHPSLLASNQQQPYQQNPQQMPQHQHQGMPHQMGPIPMHPNMPQLQHPSHSPMLPHPHMPRPPSQMPPLGMAGSMPMISSVPPSHPKPMSGPMGMQGAMNQMGPPMPQGPYVGMNQMHSGSMPNSGGPPIGGFPGNMPNMQAPSNAGYGQGGSFNRPQGGQMPMMQGYNPYQSGNQSGLPPNAQPGHGSHTQMPQ* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3162 674 Pfam WD domain, G-beta repeat 358 389 IPR001680 GO:0005515
Ahy20g3162 674 Pfam WD domain, G-beta repeat 310 346 IPR001680 GO:0005515
Ahy20g3162 674 Pfam WD domain, G-beta repeat 267 304 IPR001680 GO:0005515
Ahy20g3162 674 Pfam WD domain, G-beta repeat 144 177 IPR001680 GO:0005515
Ahy20g3162 674 Pfam WD domain, G-beta repeat 225 262 IPR001680 GO:0005515
Ahy20g3162 674 Pfam WD domain, G-beta repeat 189 220 IPR001680 GO:0005515
Ahy20g3162 674 Gene3D - 53 260 IPR015943 GO:0005515
Ahy20g3162 674 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Ahy20g3162 674 PRINTS G protein beta WD-40 repeat signature 207 221 IPR020472 -
Ahy20g3162 674 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Ahy20g3162 674 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 136 IPR001680 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 220 - -
Ahy20g3162 674 MobiDBLite consensus disorder prediction 483 506 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 389 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 267 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Ahy20g3162 674 MobiDBLite consensus disorder prediction 453 537 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 346 - -
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 306 - -
Ahy20g3162 674 PANTHER WD40 REPEAT PROTEIN 14 665 IPR045245 GO:0031124
Ahy20g3162 674 Gene3D - 261 397 IPR015943 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 178 IPR001680 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Ahy20g3162 674 SUPERFAMILY WD40 repeat-like 100 389 IPR036322 GO:0005515
Ahy20g3162 674 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 389 IPR001680 GO:0005515
Ahy20g3162 674 MobiDBLite consensus disorder prediction 620 674 - -
Ahy20g3162 674 MobiDBLite consensus disorder prediction 1 34 - -
Ahy20g3162 674 SMART WD40_4 139 178 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 307 347 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 181 220 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 265 304 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 350 390 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 92 136 IPR001680 GO:0005515
Ahy20g3162 674 SMART WD40_4 223 262 IPR001680 GO:0005515
Ahy20g3162 674 CDD WD40 108 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3162 Ahy-Chr20 142265270 142274165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3162 98 365 Miscellaneous Gene Families AT5G08390 25.185 8.00e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3162 K15542 - gmx:100791889 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3162 20 142265270 142274165 Ahy10g2601 10 115502143 115511622 hybridization