Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3160 ATGAAGGAGGAAACAGAAAAAACAAAAATGTCCGCGGGCGATTCCTTCGCGAACCACAAGCTATGCGGTTTCCTCTGTGCCGTTCTCAGAGTCACTCCTCCAATTCGATCTGAAGGATATAGTTCCACTTCTTTGTTCAACGACCAATGCGAGATCTTCGGCGACGGTTTCCGGTCCCGGAATGGCGTCGTTTTGTGTCCGTTGGGGACTGGTTCGGATTCAGGACAATGCGAAGGAGGAGAGAGTAGTAGCAGTGGTGGTAGCGGCGGATCCTCTTCGAAAGGGAGGAGGATGAGTAAGGTTGGGATGGTGAATGGGAGCATTAGCGTGGTTCACCAGCTTCACGCTCTGGTGAGCCGCAACTGCATCACGAGTGATGCTCGAGTGGTGTGGGTGGAGGTCGGTGAAGGGAAGGAGGTGAGGGCGGTGGTACTCATCGATGTCTACGTTACAATTGAGCTCTGGAGTGGCTGGCAGTTCCCACGGTCGGGGCCGGTTGCCGGCGCTTTCTTTAGCCACCTGAGCTGTGATTGGGACAAGAGAAGTTCGATACTTTCTGATCCAGACTATTTTATGAAGACTTTTGGGACAAGCGACAACATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTGTGGTGCGAGTGATTCTTCAAAGAAAAGACTATTTGAACTTCATGAAATATTTAAGATGGTACCTGGTGTTGGAAAACAGCAGAAATCTAACAATTCAAGGATAGTACCTATTGATAATGCTTTCGGATCTGGGATTTGGGAGATATCTGATGATATTTTAACCAAAATTTTAGCTTGCCTTGGTCCAATGGACCTCACTAGGGTATCTGCAACATGTCGACATCTCAGATCCTTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTCTTTCCTCATCAGCAGACTGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATTTTGAACAGTTGCTACATCCCTTATATATTGCTCTCTTAACTGAAGATGGCTTTAGTTTCCACGTGAATACTGTATCTGGGGAAATAATTTCTGAGGAAACTCCCACCATCAGAGATTTTCGCGGAGGGATGTTTTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAACACTTTCTCTTATTGTGAAGACACAAGGTACTCTGGCAGATCCACCAGACGGGGCAGAAGTAATCTGGTGTCAACATAATGGTAACCAGAAATGTGGTTATTATGAGATCAGTGGTAAGAGGGATGTGGCCCAAGATACTAGTAAGAATAATGAGAACCATGACTACTCCTCAAAAAGAGCCAGATTGATGAATCCTGCTGGGAAAATTACTACACAAAATGACGTAATTTCTGCAGAAGCTATGAAATCGCCTGTAGATGCATCCTTTGAAGAATCGGTGCCTGCCAGTCGAAGCACTAGGAGTCTCAGTTGCGTCAAGAAAAAACTGAATCTCTCCTTTGAAGATGAAGACTTGATTTTCAAGGAAAGAAGAGTTGGTATGAGATCACATAAAAGAAATCATGCATCAGATATTGCATCATGTGTACCACCAAATAAACTAGTTAATGCTTCATATGGACGTGGGAAAAGTTCCAAGTTGCGTGGGAATCCTAAAGTTGATTGTTTGGAGTCCAATGATACATGGATTCAGTGCGATGCATGTCACAAATGGCGAAAGCTTGCAGATAATATTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTCATATCAGAGTTGTAGTGTCCCAGAACAACATTTCCAGAATAGCTGTAAGATAACATACTTGCCAGGATTTCACTTGAAAGGAACTCTTGGGGGTTTGGAACAAAATATTTCCTTTTTCATTAGTGTTCTTAAGGAGCACTGTACATTGCTGAATTCTCAGTCAAAGAAGGCTCTGACTTGGTTGGTTAAACTTTCAGCAGATCGGATTGCAGGAATGGAAACACATGGCATACGGGGGCCCATTTTGAACTCTTGTAGTACGTCTAATGGATATTTTAATGCATTCCACAAAATATTTCAAGCATTTGGCCTTGTAAAGAGAGTAGAGAAAGGTATATGCAAGTGGTACTACCCACAAAATCTTAGCAATTTGACTTTTGATGTGAAAGCACTTGGCATGGCTCTGCGTGAGCCATTAGATTTTGTGAGGCTATACTTGTCAAGAGCAACCCTCATAGTTGTTCCAGCAAATCTGGTTGATCATTGGAAAACACAAATAGAGAAGCATGTAACTCCTGGTCAATTGCGGGTGTATGTTTGCGTTGATCAGCGGAAGCCATCTGCACACTGTTTAGCTTGGGATTATGATGTTGTTATAACTACCTTTAGCCGTTTAAGTGCAGAGTGGAACCCACGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTAGGATAATTTTAGACGAAGGTCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCAATGATGGCTTCAAATCGTTGGATACTAACAGGTACTCCAACACCTAACACCCCTAACAGCCAACTCCCACATCTACAACCTCTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAGAAGTCGTGGGAAGCTGGCATCCTTAGGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCGCGCCTGTTGCATTTAATTCAGAAGTGCATGATTAGTGCAAGAAAGGTAGACTTGCAAAACATTCCGCCATGCATTAAGAAAGTTGTTTATGTGGATTTCAGTGAGGAACATGCTAGAAGTTACAATGAATTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGACCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTCGAAGTGCAACCATAAAGAATGTGAGGCTGTCTTGCTGTGTTGCTGGGCATATTAAAGTTACACATGCTGGAGAAGATATTCAGGAAACAATGGATATTTTAGCACAAAGTGGTCTTGATCCTACTTCGGCGGAGTATAGCTCCATAAGATATAGTCTCCTATTTGGTGGTAATTGTGTCAGATGCAAGGAGTGGTGCCGCCTTCCTCTCATTACACCTTGTCGCCATCTATTGTGCCTTGATTGTGTTTCTTTAGACAATATGAAGTGTACATACCCTGGATGTGGTAAACCATACGAAATGGAGAGTCCTGATTCATTGGCCCGACCAGAAAATCCTAACCCAAAGTGGCCTGTGCCCAAAGATCTTATTGAGTTGCAGCCTTCGTATAAGCAGGATGATTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTCTCCTATCTTGTCCAGAGGTTAAAAGCTTTGCAAGAAATCAATGAAGAGATGGGTTTCTGCAAAGCCAAGAGCAATCATGAGCTTGATACTGAGAATAGCTTCCCTATGCATATGAGAGATGGTGGATCATTATTCCAGGAATGTTCTATAAGAAGCACTATGACCAATATGAAACCTGACAAAGTTTTGATATTTTCCCAGTTTCTGGAGCATATACATGTCATTGAACAGCAGTTGACCATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCAAGCAGCAAGAAGAAGTCATTAGCCACATTCCAGCATGATTCAAGTTGTATGGCACTTGTGATGGATGGAAGCGCTGCATTGGGGCTTGACCTGAGTTTCGTTACGCATGTATTTTTGATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGCCGTGCCCATCGCATGGGTGCTTCTCGTCCTATTCATGTGGAAACCTTGGCAATGCGTGGTACCATTGAAGAACAAATGGTGGAGTATTTACAGGATGCTGATAAATGTAGAAGATTTCCTAGTCAAGATGCTCCCAAATCTGTAGATGATAGCGGGGCACGAGGACACCGTTCATTACATGATTTTGCTGAAAGTAGTTATCTACTCAAACTTAGATTTGTATATACTAATCCAGAAACCCTAAAAGGTGTATGA 4056 0.4297 MKEETEKTKMSAGDSFANHKLCGFLCAVLRVTPPIRSEGYSSTSLFNDQCEIFGDGFRSRNGVVLCPLGTGSDSGQCEGGESSSSGGSGGSSSKGRRMSKVGMVNGSISVVHQLHALVSRNCITSDARVVWVEVGEGKEVRAVVLIDVYVTIELWSGWQFPRSGPVAGAFFSHLSCDWDKRSSILSDPDYFMKTFGTSDNIWNLSDCHVLGCKLHCGASDSSKKRLFELHEIFKMVPGVGKQQKSNNSRIVPIDNAFGSGIWEISDDILTKILACLGPMDLTRVSATCRHLRSLAASVMPCTKLNLFPHQQTAVEWMLHRERNFEQLLHPLYIALLTEDGFSFHVNTVSGEIISEETPTIRDFRGGMFCDEPGLGKTVTTLSLIVKTQGTLADPPDGAEVIWCQHNGNQKCGYYEISGKRDVAQDTSKNNENHDYSSKRARLMNPAGKITTQNDVISAEAMKSPVDASFEESVPASRSTRSLSCVKKKLNLSFEDEDLIFKERRVGMRSHKRNHASDIASCVPPNKLVNASYGRGKSSKLRGNPKVDCLESNDTWIQCDACHKWRKLADNIMANSSAAWFCSMNTDPSYQSCSVPEQHFQNSCKITYLPGFHLKGTLGGLEQNISFFISVLKEHCTLLNSQSKKALTWLVKLSADRIAGMETHGIRGPILNSCSTSNGYFNAFHKIFQAFGLVKRVEKGICKWYYPQNLSNLTFDVKALGMALREPLDFVRLYLSRATLIVVPANLVDHWKTQIEKHVTPGQLRVYVCVDQRKPSAHCLAWDYDVVITTFSRLSAEWNPRKRSVLMQVHWFRIILDEGHTLGSSLNLTNKLQMAISMMASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEEAYGLNQKSWEAGILRPFEAEMEEGRSRLLHLIQKCMISARKVDLQNIPPCIKKVVYVDFSEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDILAQSGLDPTSAEYSSIRYSLLFGGNCVRCKEWCRLPLITPCRHLLCLDCVSLDNMKCTYPGCGKPYEMESPDSLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQEINEEMGFCKAKSNHELDTENSFPMHMRDGGSLFQECSIRSTMTNMKPDKVLIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMHSSSKKKSLATFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMVEYLQDADKCRRFPSQDAPKSVDDSGARGHRSLHDFAESSYLLKLRFVYTNPETLKGV* 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3160 1351 CDD DEXDc_SHPRH-like 731 908 - -
Ahy20g3160 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 907 IPR027417 -
Ahy20g3160 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 809 1312 IPR027417 -
Ahy20g3160 1351 Gene3D - 1091 1310 IPR027417 -
Ahy20g3160 1351 Pfam SNF2-related domain 309 965 IPR000330 GO:0005524|GO:0140658
Ahy20g3160 1351 PANTHER OS01G0952200 PROTEIN 93 1332 - -
Ahy20g3160 1351 SMART helicmild6 1191 1273 IPR001650 -
Ahy20g3160 1351 MobiDBLite consensus disorder prediction 75 95 - -
Ahy20g3160 1351 Pfam Helicase conserved C-terminal domain 1174 1273 IPR001650 -
Ahy20g3160 1351 CDD SF2_C_SNF 1176 1283 - -
Ahy20g3160 1351 Pfam F-box domain 264 298 IPR001810 GO:0005515
Ahy20g3160 1351 Pfam CW-type Zinc Finger 554 597 IPR011124 GO:0008270
Ahy20g3160 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 387 IPR027417 -
Ahy20g3160 1351 ProSiteProfiles Zinc finger CW-type profile. 549 600 IPR011124 GO:0008270
Ahy20g3160 1351 SMART ultradead3 302 878 IPR014001 -
Ahy20g3160 1351 Gene3D - 549 603 - -
Ahy20g3160 1351 Gene3D - 721 911 IPR038718 -
Ahy20g3160 1351 MobiDBLite consensus disorder prediction 73 98 - -
Ahy20g3160 1351 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1167 1319 IPR001650 -
Ahy20g3160 1351 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1332 - -
Ahy20g3160 1351 ProSitePatterns Zinc finger RING-type signature. 1045 1054 IPR017907 -
Ahy20g3160 1351 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 867 IPR014001 -
Ahy20g3160 1351 SUPERFAMILY F-box domain 260 297 IPR036047 GO:0005515
Ahy20g3160 1351 SMART fbox_2 264 304 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3160 Ahy-Chr20 142254241 142261616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3160 737 1293 RAD5 or RAD16-like Gene Family AT5G22750 25.926 3.42e-43 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy20g3160 SNF2_N 2.20E-97 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3160 - - adu:107471940 2679.82