Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3116 ATGGTGGCAACAAATGGTTCCAATGATGATCTCAAATATGAACAACATCAAGCATCAAACCTCCACAAAAATTCCCATATACTAGAATTTGTGAAGTTAGCCAATGATAATAGTTCAATTCATGAGTCCAAAGTAGTGGAAGAACATGATTTTTTCCGCATAGAGCACAAGACATCATCAAATAATTTAGAGACAAAGGCCTTTTTATGCAACTATTGTAAGAAGGAGTTCTCTTCTTCACAAGCATTAGGAGGGCACCAGAATGCACACAAACAAGAGCGCGCGTTAGCGAAATGTCGCCGAGAGATTGATGCTGGTGTTTTTGGTTACCCATATTGTTTTTCCTATCACCCTTACCCTAGCTTTCCCACACACCATTTTTGTGGTTCTTCTTATAACAATAATACTATTAGGGCACTTGGAGTTAGGGTGGAATCTATGATTCATAAGCCAAATTTATGTCCCAATAAATGGAGTGGAATCATGATGAGACATGCTCACCAAACAAAGAAGACAGAAGGCCCCTCTAGCTCTATGCTTGATTTGTCACTTAAGCTCTAA 561 0.3886 MVATNGSNDDLKYEQHQASNLHKNSHILEFVKLANDNSSIHESKVVEEHDFFRIEHKTSSNNLETKAFLCNYCKKEFSSSQALGGHQNAHKQERALAKCRREIDAGVFGYPYCFSYHPYPSFPTHHFCGSSYNNNTIRALGVRVESMIHKPNLCPNKWSGIMMRHAHQTKKTEGPSSSMLDLSLKL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3116 186 Gene3D Classic Zinc Finger 41 105 - -
Ahy20g3116 186 PANTHER ZINC FINGER PROTEIN 3-LIKE 10 159 - -
Ahy20g3116 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Ahy20g3116 186 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 159 IPR044246 GO:0009788
Ahy20g3116 186 MobiDBLite consensus disorder prediction 166 186 - -
Ahy20g3116 186 MobiDBLite consensus disorder prediction 172 186 - -
Ahy20g3116 186 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Ahy20g3116 186 Pfam C2H2-type zinc finger 67 92 - -
Ahy20g3116 186 SUPERFAMILY beta-beta-alpha zinc fingers 65 95 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3116 Ahy-Chr20 141807703 141808263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3116 20 150 C2H2 Transcription Factor Family AT5G25160 42.857 2.32e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy20g3116 zf-C2H2_6 1.10E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3116 - - ahf:112786570 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3116 20 141807703 141808263 Ahy20g3116 20 141807703 141808263 ECH