Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g3090 ATGGATTCTTCAGAAGCACTGCCACCTCCACCACCAATCATTCCTGCAAATTTTGTTCCTGCGAAAGAAGAATCTCAGGTAAAGTTCTTGCCTATGGTTAGAAGAGGTGTTGGGACCAAGGGACAGAAGATACAGCTGCTGAGTAACCATTTTAGAGTTGGTGTGGGGATAAAGGACAGTTTCTTCTATCATTATAGTGTTGCAATGTCTTATGAGGATGGCAATCCGGTTGAAGCTAAGGGAATTGGCCGAAAGGTCATAGACAAAGTTTATGAAACATATGATGAACTGAAAAACAAGAATTTTGCATATGATGGGGAGAAAAGCTTATTTACTCTTGGTTCTCTTAAAGAGAAAAAGATGGAATTCACTGTTGTGCTGGAGGATATTTCATCAAGGAGGGTTGGAAGGACTGGTGATGACCATGATAGCCCTACTCATGGAGAGAAAAAGAGGATGAGGCGTCAATCTCAGTCCAAAACTATCAAGGTAGTGATCAGTTATGCAGCCAAAATTCCAATCCAAGCAATTGCAGATGCCTTGCTCGGACAAGATTCCGAGCATTTCCAGGAAGCATTGAGGGTCCTTGACATCATATTGAGGCAGCATGCAGCAAAGCAGGGCTGTCTCCTTGTCCGCCAATCCTTCTTCCATGACAATCCAAGGAATTATACTGACCTAGGAGGTGGTGTTCAAGGCTGCCGTGGTTTCCATTCAAGTTTCCGTCCCACTCAAGGAGGTTTATCTCTGAATATTGATGTGTCAACTACTATGGTTGTAAAGCCTGGCCCTGTACTGGACTTCCTTTGTGAGAATCAGAATGTGAAGCATCCAAATCTTATTGATTGGACCAAGGCAAAAAGAGTGCTGAAAAACCTCAGAATCAAGGCTAATAATATTGAGTACAAAATCAGTGGACTCAGTGATAATCCTTGCAGGACTCAAAAGTTTTCAATGAAAGATGGGAAGGACTCGAATGGCGAACCACGGATAATTGAAATCACAGTTTACAATTACTATAAACACCATAAGGGGATTGAATTGCCCTATTCTGCTGATTTCCCCTGCATCAATGTTGGGAAGCCAAAGCGCCCAACTTATTTTCCAGTGGAGCTATGCACCTTGATCTCGTTGCAGCGATACACCAAGGCATTGACAAATTTGCAAAGGGCTCAGTTAGTTGAGAAGTCAAGGCAAAAGCCCAATGAAAGGAAAGAAGCTTTGGCTGGTTCTTTAAGAAACAGCAGATATGGTAATGAACCTATGCTTCGCTCTTCTGGGATTACCATTGAATCTGATTTTACTCGGGTTGAAGGTCGTATTCTGCAGCCCCCAAGACTTGTAGTAGGAAATGAGGAGAGCTTCATTCCAAGGGGTGGACGCTGGAATTTCAACAATAAGAAACTAGTTAAACCTATGAGGCTTGAGCGCTGGGCCGTTGTAAACTTCTCAGCTCGCTGTGACACACGTTTTCTGTGTAATACCATCAAGAAGTGTGCTGAAATGAAGGGGATTTACATAAATCCTCCATATCAAGTATTCGAAGAGGATGCTCGTTCAAGGCGCGATCCGGCACCTCTTAGGGTGGAGAGGATGTATCAACTTGTAAAGTCCAAGTTGCCTGGCCCCCCTCAACTTCTGTTGTGCATTCTTCCAGAGAGAAAGAATTCTGATATTTATGGACCTTGGAAAAGGAGAAGTCTTGCTGATGAAGGAGTTGCAACACAGTGTATTGCACCAACAAAAATTAATGATCAGTATATTACTAATGTTCTCCTGAAAATTAATGCAAAGCTTGGTGGAATGAATTCCTTCCTGTCAATGGAGTGTGCTCCTTCTATACCTTTACTTCATAATGAAGCTACCTTAATTCTTGGTATGGATGTATCTCATGGATCACCAGGCCGATCGGATGTGCCATCTATTGCCGCGGTTGTGAGTTCAAGGAAATGGCCTTCAATATCCTGCTATAGAGCCGCAGTTCGCACTCAATCACCAAGAGTCGAGATGATTCAGTCTTTGTTTAAGCCTGTTCCTTCCGATGATGGTAACAAAGATGAAGGTATTATCAGGGAGCTAATTATGGACTTCTATGAAACTTCAAAACAAAGGAAGCCTCAACAGATTATAATTTTCAGGGATGGAGTGAGTGAATCGCAGTTCATCAAGGTCTTGAACGAAGAGTTAGTTCCAATCATAGAGGCATGCAAATATCTTGATGAGAAATGGTCTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAACCATCACACCAAGTTCTTTAAGGACAATGCACCAGATAATGTTCCACCAGGAACTGTTATTGACAGCCAAATCTGTCATCCGAAGAACAATGACTTTTATATGTGTTCTCATGCTGGCATGATTGGGACAACTCGACCTACTCATTACCAAGTTTTACATGATGAAATTGGGTTCTCTGCCGATGATTTACAAGAAATAGTGCATTCTCTTTCTTATGTATACCAGAGGAGTACAACTGCCATATCAATAGTTGCTCCAGTTTGCTATGCTCACTTAGCAGCTGCCCAAATGGCACAATTTATCAAGTTTGATGAACTGTCTGAGACATCTTCTAGCCATGGTGGAACTACAATTCCTGGTGCAGTGCATGTTCCTCAGTTACCCCTTCTTCACCAAGATGTTGCCAATTCAATGTTCTTCTGTTAA 2691 0.4225 MDSSEALPPPPPIIPANFVPAKEESQVKFLPMVRRGVGTKGQKIQLLSNHFRVGVGIKDSFFYHYSVAMSYEDGNPVEAKGIGRKVIDKVYETYDELKNKNFAYDGEKSLFTLGSLKEKKMEFTVVLEDISSRRVGRTGDDHDSPTHGEKKRMRRQSQSKTIKVVISYAAKIPIQAIADALLGQDSEHFQEALRVLDIILRQHAAKQGCLLVRQSFFHDNPRNYTDLGGGVQGCRGFHSSFRPTQGGLSLNIDVSTTMVVKPGPVLDFLCENQNVKHPNLIDWTKAKRVLKNLRIKANNIEYKISGLSDNPCRTQKFSMKDGKDSNGEPRIIEITVYNYYKHHKGIELPYSADFPCINVGKPKRPTYFPVELCTLISLQRYTKALTNLQRAQLVEKSRQKPNERKEALAGSLRNSRYGNEPMLRSSGITIESDFTRVEGRILQPPRLVVGNEESFIPRGGRWNFNNKKLVKPMRLERWAVVNFSARCDTRFLCNTIKKCAEMKGIYINPPYQVFEEDARSRRDPAPLRVERMYQLVKSKLPGPPQLLLCILPERKNSDIYGPWKRRSLADEGVATQCIAPTKINDQYITNVLLKINAKLGGMNSFLSMECAPSIPLLHNEATLILGMDVSHGSPGRSDVPSIAAVVSSRKWPSISCYRAAVRTQSPRVEMIQSLFKPVPSDDGNKDEGIIRELIMDFYETSKQRKPQQIIIFRDGVSESQFIKVLNEELVPIIEACKYLDEKWSPKFTFIVAQKNHHTKFFKDNAPDNVPPGTVIDSQICHPKNNDFYMCSHAGMIGTTRPTHYQVLHDEIGFSADDLQEIVHSLSYVYQRSTTAISIVAPVCYAHLAAAQMAQFIKFDELSETSSSHGGTTIPGAVHVPQLPLLHQDVANSMFFC* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g3090 896 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 895 - -
Ahy20g3090 896 SUPERFAMILY PAZ domain 257 417 IPR036085 GO:0005515
Ahy20g3090 896 SUPERFAMILY Ribonuclease H-like 530 855 IPR012337 -
Ahy20g3090 896 Pfam Argonaute linker 1 domain 212 260 IPR014811 -
Ahy20g3090 896 Pfam Piwi domain 547 857 IPR003165 GO:0003676
Ahy20g3090 896 CDD Piwi_ago-like 421 851 IPR045246 -
Ahy20g3090 896 Pfam Argonaute linker 2 domain 403 447 IPR032472 -
Ahy20g3090 896 MobiDBLite consensus disorder prediction 134 152 - -
Ahy20g3090 896 Gene3D paz domain 256 381 - -
Ahy20g3090 896 Coils Coil 290 310 - -
Ahy20g3090 896 Gene3D - 614 896 IPR036397 GO:0003676
Ahy20g3090 896 Pfam PAZ domain 266 393 IPR003100 GO:0005515
Ahy20g3090 896 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 895 - -
Ahy20g3090 896 ProSiteProfiles Piwi domain profile. 546 857 IPR003165 GO:0003676
Ahy20g3090 896 ProSiteProfiles PAZ domain profile. 302 377 IPR003100 GO:0005515
Ahy20g3090 896 SMART Piwi_a_2 546 857 IPR003165 GO:0003676
Ahy20g3090 896 CDD PAZ_argonaute_like 262 376 - -
Ahy20g3090 896 SMART DUF1785_2 210 262 IPR014811 -
Ahy20g3090 896 Gene3D - 441 607 - -
Ahy20g3090 896 Pfam N-terminal domain of argonaute 42 200 IPR032474 -
Ahy20g3090 896 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g3090 Ahy-Chr20 141577802 141584376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g3090 34 896 Eukaryotic Initiation Factors Gene Family AT5G43810 35.778 1.20e-162 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g3090 K11593 - pop:7486850 1278.46